Commit Graph
49 Commits
Author SHA1 Message Date
Marius CiepluchandClaude Opus 5 0beae46ba9 feat(contributor-scan): ask a repository what it calls that the ontology does not model
Five of seven families established nothing in the family census, and every one failed for an ontology
reason with the flow engine ready and nothing to aim at. Each was found by investigating one family
at a time over days. vocabulary.sc asks it once: census the calls, subtract everything any fact table
names, rank the remainder by how often it is called and whether it sits in a method that reads
untrusted input. It needs no dataflow, because the structural pass already walks every call.

The harness reads its token set from the SPECS rather than from the TOML, so it measures what the
analyser actually consults: a fact the loader drops is not part of the ontology however neatly it is
written. Ontology sizes today are 152 tokens for JavaScript, 167 for Python, 84 for PHP.

Both carry the constraint the maintainer set: the output is a candidate list, never an ontology. A
name becomes a fact only when someone resolves it to a library API, states the weakness class and
records provenance, because adding a name because a subject called it is how a general-purpose tool
becomes a fixture of its own benchmark.

Also records what the bounded PHP transfer attempt found. At 25 regions the first case now runs to
completion and writes a full artifact in 1,706 s, where at 100 it had exhausted a 2,400 s deadline
with nothing. But 25 of 4,461 regions is 0.6 percent of the population and the declared target was
not among them, so the question was never asked. Task 13.3 therefore depends on 7.3, skipping
arbitration where the evidence says there is nothing to find: raising the budget is already measured
to fail, and making most of the budget unnecessary has not been tried.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-09-21 17:12:24 +02:00
Marius CiepluchandClaude Opus 5 e6bdac46e2 fix(access-control): decide the sibling scope, and see identity a destructuring spelled away
Two of NodeGoat's three corroborated claims were correct code. `const { userId } = req.session`
lowers to a temporary and then a field read, so nothing in the graph spells session.userId by the
time the value reaches dao.getByUserId(userId, ...), and the constraint the handler really applies
was invisible.

The arbiter now walks back three hops over the method's own assignments from the names the
operation is GIVEN, and req.session joins the identity sources. The token is only safe because of
that requirement: what discharges an object-level obligation is that the value passed to the
operation comes from the authenticated context, not that a session is mentioned nearby. A handler
that reads the session for logging and keys its query on a path parameter is the bug this family
exists for, and it stays unguarded.

Two exclusions the measurement forced, each caught by a page whose whole purpose is the leak it
demonstrates.

- A callback is not a constraint. Taking identifiers from the whole argument subtree credited
  NodeGoat's memo listing with a discharge, because memosDAO.getAllMemos((err, docs) => ... userId
  ...) reads every memo in the collection and only RENDERS the session's user. Method references
  are excluded from the argument names.
- An assignment is not a dominating guard. The session read dominates the query, so that clause
  credited it instead and the memo listing went quiet again. An assignment is a read of the
  authenticated context, not a check applied to it, so operator calls are excluded there -- the
  same exclusion the sink matcher needed. The leak stays reported.

On NodeGoat displayContributions and displayProfile go silent, the allocations insecure direct
object reference, both benefits pages and the memo listing stay, and the login and signup handlers
become honestly unguarded rather than accidentally cleared by a callback's text. Six corroborated
where there were seven, and a better six. VAmPI is unchanged at two entailed findings.

The sibling scope is decided by measurement and kept at the file. On NodeGoat the region's own
file entails two handlers, both public routes and both false, and no true defect at all. Every
handler in the application entails six: four true, and the same two public routes. Both scopes
carry the same false positives, because neither can tell a public route from a protected one --
a semantic question that is already the corroborated band's residual. With the carried rung capped
the scope changes no verdict, only the witness, so widening it would buy a repository-wide walk
per question and no precision. A public-route discriminator would change that; the file scope is
not what holds this family back.

1,415 tests pass, sixteen skipped; thirteen Joern-gated query tests pass in the image.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-09-20 15:16:03 +02:00
Marius CiepluchandClaude Opus 5 c0427e6ceb feat(access-control): model the collection read, by argument shape rather than by name
NodeGoat's documented insecure direct object reference reads with
allocationsCol.find(searchCriteria()), and `find` was absent from an operation table holding
findOne, findById, findAll and findByPk. The obligation was missing at the commonest read there
is, so that defect raised nothing at any point in the pipeline.

It was absent for a good reason, and the reason is the argument, not the name. Measured on
wp-statistics, a WordPress plugin that ships jQuery: its assets hold 88 calls named find, of
which 70 pass a jQuery selector, 13 pass a predicate to Array.prototype.find and 5 pass a
selector built at run time by a template literal or a concatenation. None is a collection read.

So the obligation is claimed only where the first argument has the shape of a query document.
The operation fact states which argument with query_document_arg, and the arbiter that can see
argument shapes decides it: no arguments at all, an object literal, or a builder call are
claimed; a method reference, a literal, an operator call and a bare identifier are not. Each
exclusion is one of the measured classes above rather than a guess.

Zero of those 88 calls became an obligated operation, and the zero is measured rather than
empty: the same run's census reports 60 files and 4,552 methods, and the files holding those
calls are in it.

On NodeGoat all three find calls are collection reads and all three are claimed, which raises
the obligation at four more handlers -- the allocations handler that takes userId from req.params
on an authenticated route, the benefits pages whose isAdmin guard is commented out in the route
table, and the memo listing. Seven of fifteen handlers now reach a verdict, all corroborated,
none reported without a judge, and the census is unchanged on both subjects.

A bare identifier is deliberately not claimed: col.find(query) and arr.find(pred) are the same
shape and neither repository measured holds one, so this is a stated false negative rather than
an unmeasured false-positive risk.

1,415 tests pass, sixteen skipped; twelve Joern-gated query tests pass in the image.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-09-20 12:10:27 +02:00
Marius CiepluchandClaude Opus 5 102a21fc4e feat(access-control): carry the obligation across the route-and-DAO split
The census measured this family completing 35 questions on NodeGoat with no obligation raised
anywhere: every modelled data operation lives in app/data/*-dao.js, none in a route handler
file, and operations were scoped to the region's own file. The family had nothing to be right or
wrong about.

The obligation now follows the one named call the handler writes, out of the region's file and
no further. How it is followed is the point. jssrc2cpg does not resolve
allocationsDAO.getByUserIdAndThreshold(...) to the DAO body: the callee is an external stub with
no code. That stub's fullName records where the member was written, so the implementation is
reached by the graph's own provenance rather than by a repository-wide name guess, which is the
false positive the file scope was closed against. A control asserts it: a third module defining
a member of the same name that nothing imports is not attributed.

A row is attributed to the region's DECLARED function, which is what lets a question about
displayAllocations match a graph that holds a <lambda>. A carried row is also checked for a guard
at the CALL, because that is where a handler establishes who is asking. The method holding a
carried operation joins the question's context scope, so the module holding the query cannot
change under a claim that depends on it without the change being attributed. The witness names
both sites and the finding is located at the call, which is the line a contributor changed.

A carried obligation corroborates, it does not entail, and that was measured rather than
assumed. Entailing it reported handleSignup, which looks a user up by name to check the name is
free during registration and is public by design, because two authenticated siblings in the same
file pass req.session.userId into the same module. The entailed rung's justification is that one
FILE contradicts itself, same file and same trust context; carried, the compared operations live
in a data-access module that handlers of different trust contexts share. The corroborated band
already asks the right residual: does this operation require a check, or is the route
legitimately public?

Measured on NodeGoat: 15 handlers asked, obligations raised at zero before and six now, three
reaching a verdict, all corroborated, none reported without a judge. VAmPI unchanged at two
entailed findings, because it keeps handler and query in one file and carries nothing.

What this does not reach is recorded, not implied. NodeGoat's documented insecure direct object
reference still raises nothing, because its module reads with allocationsCol.find(...) and find
is not a modelled operation: Array.prototype.find and jQuery's .find are everywhere, so it needs
an argument-shape discriminator and its own measurement (task 14.8). Two of the three corroborated
claims are correct code whose identity read a destructuring spelled away, and the cross-file
contradiction that would entail the real defect needs a sibling-scope decision (task 14.7).

1,415 tests pass, fifteen skipped; eleven Joern-gated query tests pass in the image.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-09-20 08:57:32 +02:00
Marius CiepluchandClaude Opus 5 f31ef862a7 fix(output-encoding): ask about the server half, and say what the family cannot decide
The census recorded this family completing 44 questions on a Node application and finding
nothing, which is what a client-only vocabulary must do there: all six declared sinks were DOM
sinks. NodeGoat's cross-site scripting is server-side.

Decision: the family asks about a value reaching a rendering call, and states in its own
declaration that it cannot decide template-mediated escaping. Whether res.render is safe depends
on the engine's autoescape setting and on the template's markup, neither of which is at the
call, so res.render is not a sink and the family's limits field says so. A new CWE-79 sink
covers res.write, res.end, res.send and the response.* spellings; res.json stays out because an
application/json body is not a document.

Template auto-escaping is claimed where its evidence is, as a configuration defect:
swig.setDefaults, nunjucks.configure and marked.setOptions are security settings now.

It establishes a finding: app/routes/research.js:25, model_entailed,
`req.query.url + req.query.symbol -> res.write(body)`. The handler fetches a URL the caller
chooses and writes the response body into a text/html response, so the document served from
this origin is the attacker's. The record states how coarse the step is: the path from url to
body runs through the client's callback parameter, which the graph treats as reachable from the
call's arguments, so the conclusion rests on the call's semantics rather than on what the graph
established. Five of seven families now establish findings.

Four defects were found on the way, three of them false positives this change would otherwise
have shipped.

- The permissive-value set was shared across every setting, while a boolean's polarity belongs
  to the setting: true leaves the door open in cors({origin: true}) and closes it in
  swig.setDefaults({autoescape: true}). Adding the template engines would have reported the fix
  as the defect on the line that offers it. ConfigSpec now carries per-setting values, and
  Jinja2's Environment moved out of Python's shared list for the same latent reason.
- config.sc matched a dotted setting on its trailing segment alone, so marked.setOptions would
  have claimed an editor's setOptions. dominance.sc already required the qualifier.
- taint.sc asked its flow query of every argument including the receiver at index 0. On a
  response sink the receiver is the response object, so res.end() -- which takes no data -- was
  reported exactly like the res.write(body) two lines above it. Flows now use the real
  arguments, as arity already did.
- The arbiter sorted a file's settings by line number as TEXT, so line 126 preceded line 78 and
  which setting a file reported depended on the spelling of its line numbers.

Template escaping disabled at server.js:135 is detected, measured model_entailed against the
real query and the real arbiter, and still not reported: the arbiter returns one verdict per
question and that file has an earlier permissive setting. Task 14.6 carries it rather than
hiding it.

1,415 tests pass, thirteen skipped; nine Joern-gated query tests pass in the image.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-09-19 20:38:39 +02:00
Marius CiepluchandClaude Opus 5 4e2619e248 feat(pre-push-safety-net): census the declared families and fix a sink matched in a comment
Seven vulnerability families are declared and two had been proven. The census asks each of
them, on whole checkouts of NodeGoat and VAmPI, whether it establishes anything at all, and
reports a family that answered and found nothing separately from one that was never asked.

Four establish findings: injection, access_control, config_secrets and untrusted_destination.
Output encoding, path, prototype and deserialization establish nothing on either subject. All
299 NodeGoat and 35 VAmPI questions completed, so the silences are answers.

Three of those silences are diagnosed gaps, not clean code. NodeGoat's documented SSRF calls
needle.get, which the sink vocabulary does not hold. Its XSS is server-rendered, and output
encoding declares only DOM sinks, so no question it can ask could have found it. Its two
access-control defects raise no obligation at all: measured with the real dominance query,
every modelled data operation lives in app/data/*-dao.js and none in a route handler file,
while the family scopes operations to the region's own file. Tasks 14.2 to 14.5 carry each
gap; none is fixed here.

The census also found a false positive and it is fixed. NodeGoat's only prototype report was
the word `set` inside `// set these up in case we have an error case`: the matched node is the
<operator>.assignment holding the entire 1,000-character signup handler, and sinkMatches
searched a node's whole text. It now confines the text clause to the callee and excludes
operator nodes. Fourth instance of this bug class after fgets/gets, resolve/resolveUrl and
user/users. Measured on NodeGoat's non-vendor calls, injection sinks fall 28 to 3, prototype
13 to 2 and untrusted destination 26 to 7, with no true positive lost; req.query had been an
injection sink because `query` is word-bounded inside it. Witnesses now name the sink call
rather than the assignment that contained it.

1,411 tests pass, ten skipped; the six Joern-gated query tests pass in the image, including a
new one that fails on the shape this fixed.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-09-19 17:39:29 +02:00
Marius CiepluchandClaude Opus 5 b95a371b7e feat(contributor-scan): name the function a question cannot locate (M1b 12.3)
After per-family context, every remaining unresolved question reported
context_scope_empty, all in three files. The cause is not a missing producer:
app/routes/index.js requires seven handler modules and defines none of them, so a
question naming handleContributionsUpdate there names a function that file
genuinely does not hold, and the empty scope is the correct answer.

Reporting that as "scope empty" hid which of two different things had happened. A
file the frontend produced no methods for is one problem; a question naming a
function defined in another module is another, and it is the common one. Taint and
configuration now separate them, reporting context_function_unresolved with the
name in the first case and context_scope_empty only when the file has no methods at
all. The driver no longer stacks its generic gap on top of a query that already
explained itself, and the new gap is question-owned so it cannot block another
question's comparison.

Completion is deliberately unchanged. The tempting fix is to widen such a question
to its whole file, which would raise the number by answering a question nobody
asked; a question whose function the graph does not hold stays unresolved, with the
name now recoverable from the question that asked it.

Group 12 is complete: admission no longer rejects genuine findings on a
mis-extracted operation symbol, both families that could never complete their change
context now can, and the remaining unresolved questions say precisely why.

1,406 tests passed, nine skipped.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-09-17 13:28:40 +02:00
Marius CiepluchandClaude Opus 5 a91551e547 feat(contributor-scan): give each family its own change context (M1b 12.2)
Access control and configuration could not complete their change context on any
repository, which left 231 of 436 questions unresolved on the measured Node case
and made two of the three shipped families unable to answer.

The gap was larger than a missing query block. The evidence pass dispatches taint
only, because only taint has an evidence vector to rank by, so these families were
never asked for context at all. A new context pass asks each family with the flag
set.

Each query describes its own scope, which the owner research required and which
matters: copying taint's projection would describe a reachability walk these
queries never perform. Dominance exports the file's methods labelled operation,
guard or sibling, because its claim is that a file contradicts itself. Configuration
exports the file's methods labelled setting or sibling, because it asks what a file
declares. Both report an empty scope explicitly rather than implying one.

A family whose context query answers nothing keeps no context and stays unresolved,
so none can complete on another family's context. A control asserts that directly.

Confirmed on a real NodeGoat graph through the production backend: both families
produce a context summary and seven scoped methods where they previously produced
nothing. All seven are siblings for that file, which is the honest answer since it
declares no access-control operation and no matched setting.

1,405 tests passed, nine skipped.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-09-17 11:19:30 +02:00
Marius CiepluchandClaude Opus 5 b202aabd8b feat(pre-push-safety-net): bind the reachability boundary to what it limits (M1b 10.5)
dynamic_external_or_depth_context_unresolved was applied as though it invalidated
everything about a question. It does not. Bounded reachability can hide further
flows; it cannot invalidate a flow that was traced, and it cannot remove a call
from a structurally scoped enumeration.

At scan level the boundary is now recorded against its owning question without
demoting that question's answer. An unavailable context projection, an empty
context scope and an unreadable method extent are unknown ownership and still
demote.

In comparison it no longer blocks the head's own claim, since the finding rests
on a path that was actually traced, and no longer blocks an absence read off the
enumerated inventory. It still blocks every claim that rests on a flow not having
been traced, including the anchored source-connection branch, which now reports
base_reachability_bounded rather than silently passing.

The query declares the basis of its enumeration. A file- or nesting-scoped
question walks calls structurally, so an unresolved destination cannot remove one
from scope. Following the call graph makes the reachable set the scope, so the
same unresolved destination can shrink what was enumerated; that inventory cannot
establish absence while reachability is bounded, and says so.

One prior control asserted a question's own reachability gap blocks its own
claim. It is updated with its reason and split, so an own projection gap is still
proven to block while an own reachability gap no longer does.

1,362 tests passed, nine skipped. Rollout stays NO-GO.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-09-16 17:26:16 +02:00
Marius CiepluchandClaude Opus 5 c73efd2bde feat(pre-push-safety-net): export the enumerated operation inventory (M1b 10.4)
A taint answer reports traced flows, so an absent row means either that the
operation is not present or that no traced path reached it. Change comparison
needs that distinction to say a change introduced an operation, and reachability
is deliberately bounded, so the two can never be separated from flow rows alone.
That is why the veto guarding the confusion is permanently true on any real
Express application, and why it could be neither discharged nor safely removed.

The taint query now exports one row per operation it enumerated in scope, plus a
completion marker. The marker is what makes an empty inventory meaningful:
without it a scope that was never enumerated and a scope holding no such
operation are indistinguishable.

Comparison separates three outcomes on a changed line: the operation is present
in the base without a traced flow, which is a reachability statement and not
novelty; the operation is absent from an enumerated base, which establishes that
the change introduced it; or the base scope was never enumerated, which stays
explicitly unresolved. A malformed inventory row is not an empty inventory.

The arbiter now skips any row carrying a kind, so an inventory row cannot be
normalized into a flow with an empty source that names no attacker input.

Verified against the real engine on an authored two-revision JavaScript control:
the operation is enumerated on both sides, the base carries it with zero traced
flows, the zero-operation marker appears for an empty scope, and answers and
findings are unchanged. No new sink inference, alias resolver or second source
IR. 1,354 tests passed, nine skipped. Rollout stays NO-GO.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-09-16 16:46:00 +02:00
Marius Ciepluch 8c9c91be91 feat(pre-push-safety-net): validate graph identity and isolated leases 2026-09-13 16:05:51 +02:00
Marius Ciepluch 6ba2b06353 feat(pre-push-safety-net): exclude vendor inputs and partition frontend coverage 2026-09-13 11:53:29 +02:00
Marius Ciepluch ebad83009e feat(pre-push-safety-net): connect change context to ranked questions 2026-09-13 10:41:32 +02:00
Marius CiepluchandClaude Fable 5.1 983eda5886 feat(model): v4 measured; a parameter-fed field becomes strong carried only when the exact flow confirms it
v4 (provenance split): pmpro 69 and wpstatistics 172 unchanged -- their tier-4 members are source-fed
through same-file helpers that read the request; mwwpform 68 -> 248, because its CVE's region is fed by
a constructor parameter, the shape the split demotes and the exact flow had put at 30. v5 asks the flow
for exactly the parameter-fed fields a sink-bearing region reads, memoised per (family, file, field),
and reports carriedBy for diagnosis.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-11 13:27:49 +02:00
Marius CiepluchandClaude Fable 5.1 20d53f1c4d perf(cpg): the field and hook memos live at batch scope, keyed by what the answer depends on
methodsByFile, seedsByFile, fieldTaintMemo and hookKeysMemo were declared inside rowsFor and so memoised
nothing across a batch's requests: every pair re-walked the file's methods and re-ran the join's flow
queries. Hoisted, with the family's sources, sanitizers and parameterSources in the key.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-11 13:14:21 +02:00
Marius CiepluchandClaude Fable 5.1 d1f37abadd feat(model): carried with provenance -- source-fed promotes a tier, parameter-fed only orders
Structural carried (v3) measured: pmpro 391 -> 69, wpstatistics 504 -> 172, mwwpform 513 -> 68 -- and
tier 4 swollen to 555 and 569 regions, because "assigned from a parameter" was folded in with "assigned
from a source" and every constructor does the former. The query now reports carriedKind; the vector
promotes on "source" and gives "parameter" a within-tier weight of 0.75.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-11 13:11:00 +02:00
Marius CiepluchandClaude Fable 5.1 ce49bd877c perf(cpg): carried for evidence mode is structural, not a flow
The flow form -- a reachableByFlows per candidate assignment -- turned pmpro's evidence pass from 255 s
into one that did not finish in 1,800 s. Evidence may be a structural proxy, so stage one of the join is
now asked as structure: a field the region reads is assigned, in its file, from a source expression, from
a parameter of the assigning method, or from a same-file method that reads a source; a hook applied in
scope has a registered callback holding a source or such a field read. Memoised per file and per
callback for the batch. Verified on WP Statistics's record(): carried = true, 36 s including the JVM.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-11 12:53:22 +02:00
Marius CiepluchandClaude Fable 5.1 1741b6bed6 feat(model): phase 2 measured (weights v1) and carried reported by the evidence branch
budget_at_recall by a real evidence pass over every region: pmpro 391 -> 116, wpstatistics 504 -> 223,
mwwpform 513 -> 292, vampi 16 -> 16. The gate (< 50) is not met. pmpro's CVE is inside its 121 tier-4
regions; WP Statistics's and MW WP Form's are one tier low because `carried` -- stage one of the
two-stage join -- was not reported as evidence. taint.sc now reports it where a sink exists, and the
vector reads the query's answer when given.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-11 11:47:06 +02:00
Marius CiepluchandClaude Fable 5.1 c955721f92 fix(cpg): the census overlay list is layer names, not characters
One flatten too many turned "base,controlflow,typerel,callgraph,dataflowOss" into "b,a,s,e,...", and
every real build then warned that its graph lacked the dataflow layer while carrying it. The compile test
now asserts the shape on a real graph.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-11 10:49:10 +02:00
Marius CiepluchandClaude Fable 5.1 7ce0a30161 docs(cpg): name the upstream issue for joern-parse --overlaysonly (joernio/joern#6283)
Co-Authored-By: Claude Fable 5.1 <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-11 10:42:35 +02:00
Marius CiepluchandClaude Fable 5.1 5afe6fd8b4 fix(cpg): the instrument reports on itself -- census failure fails the build, overlays and heap are checked
Three checks for three findings that were each silently wrong for a day (task 5.13). A clean build whose
census cannot be taken inside the query timeout is a failed build, by name: every later query would time
out and read as "nothing here", and the launcher fallback no longer rebuilds the same graph without
asking again. The census now carries the graph's saved overlays and the worker JVM's actual heap, and the
backend warns when the dataflow layer is missing (every batch would recompute it) or the heap is not the
configured one (the knob is not reaching the JVM that matters). An empty tree counts as complete, not as
a failed count.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-11 10:42:04 +02:00
Marius CiepluchandClaude Fable 5.1 0f35578d5b perf(cpg): one taint row per evidence key, with the path count
Ten real pmpro pairs at callDepth 3 returned 3,838 flow rows. Every field the driver reads is a property
of the sink or of (source kind, source, sanitized); only `length` varies per path, and the driver ranks
by the shortest. Grouped on that key with the minimum length and a `paths` count: 1,155 rows carrying
3,838 paths, same time. The specs are corrected too -- the first write-up called the depth-3 rows
"mostly the same evidence repeated", and 3.3x is what the measurement says; the other 30x is distinct
sources.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-11 09:14:25 +02:00
Marius CiepluchandClaude Fable 5.1 60963f565c fix(cpg): the real-request cost, attributed and removed -- overlays once, seeds scoped, data tables out
Task 5.13, measured on ten real pmpro pairs at callDepth 1 with each join half switched separately and
the 54 s JVM fixed cost subtracted: both halves off 11.1 s/request, field half 10.9 s, hook half past
49 s (timeout). Stage timers put it in `hookSeedsIn("")`: every field access in all 7,061 methods put
through the field join before the first callback was answered. Seeds are now the callback's own body
and file, which is where WP Statistics's `set_current_page` and `$this->rest_hits = ...` both live.
Both halves on: 9.7 s/request. `sourceNodes` is also materialised once per request instead of once
per sink.

The WP Statistics re-verification then exposed the larger term. A `joern --script` run is two JVMs and
`-J-Xmx` sizes only the launcher, so the heap knob governed nothing; the backend now sets
JAVA_TOOL_OPTIONS too. And since PHP builds went through php2cpg directly (1ce7e9d, an hour after the
hook half was verified from a joern-parse build), every query batch has recomputed the dataflow overlay
at load -- 54 s on pmpro, and on WP Statistics an OutOfMemoryError inside OssDataFlow after 21 minutes
at 2 GB, no completion in 25 minutes at 4 GB, and no help from --max-num-def at 1000 or 200. Two
vendored browser-profile tables, one array literal each, were 60% of that graph.

Three changes, all named in the log: `queries/overlay.sc` applies the overlays once at build time and
the saved graph replaces the raw one (joern-parse --overlaysonly NPEs in 4.0.623); a source file over
1 MB is excluded as a data table and reported in `unparsed`; and the seed scoping above. After: the WP
Statistics graph reloads in 8 s, the `record` request that timed out at 520 s answers in 39 s including
the JVM, and CVE-2022-25148 is entailed again with `sourceKind = hook`. A raw-vs-saved payload diff on
pmpro shows identical evidence keys and fewer duplicate flow rows.

Also: the backend's own unit tests left fifteen ousast-cpg-* directories in /tmp per run; conftest now
keeps tempfile under the test's directory. The compile test covers overlay.sc.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-11 01:16:00 +02:00
Marius CiepluchandClaude Fable 5.1 88ada8e48c feat(ranking): phase 0 -- the baseline, the evidence instrument, and a 7x taint speedup found on the way
flow-aware-ranking phase 0: measure before changing anything.

THE BASELINE, committed as benchmarks/ranking/baselines/2026-09-10-access-rank.json
from benchmarks/ranking/position.py, which sorts regions exactly as the scan does:

    pmpro         4,463 regions  83.8% at 0.30   CVE at 390   budget_at_recall 391
    mwwpform        983 regions  81.7% at 0.30   CVE at 512   budget_at_recall 513
    wpstatistics  1,673 regions  75.3% at 0.30   CVE at 503   budget_at_recall 504
    vampi            25 regions                  BOLA at 15, 10; SQLI reached transitively

That corrects the brief's own cross-assessment: "concentration, not inclusion"
was measured on pmpro alone. On the other two plugins the CVE sits OUTSIDE a
500-region budget and is never examined; the slices found those CVEs only
because a slice has too few regions to exclude anything.

THE INSTRUMENT: `evidenceOnly` mode on the taint query -- what is in scope,
which sink calls, what shape, whether a sanitizer wraps THEIR argument, whether
a source is local or reachable -- returning before reachableByFlows is ever
called. model/evidence.py turns its rows into a vector per (region, family)
and a tier; scan.py records every pair's tier on the result and acts on none of
it. Every later phase is measured against a record made by scans that did not
know they were being measured.

    2,500 pairs in 98.9s incl. JVM load, ~40 ms per pair
    tier 0 -- no sink of that family in reach: 2,161 of 2,500 = 86%

Two earlier attempts ran past an hour each with no payload, and both were my
fault: repository-wide walks repeated per request -- the sink scan, the
reachable-method BFS, familyInRepo. Memoised across the batch.

AND THE SAME FIX REACHES THE DATAFLOW MODE. sinkCalls and reachableMethods do
not depend on the family, and were recomputed for all 2,500 requests. The
identical 250-request set with both joins on:

    2,026.3s -> 287.0s      8,105 -> 1,148 ms per request      same 5,779 rows

Most of what 5.13 measured as "the base taint query" was never dataflow. A 7x
speedup with nothing about the analysis changed; both corrections recorded in
the specs. Combined with 86% tier 0, the whole-repository taint query that
timed out at 40 minutes is ~339 real requests at ~1.1s: about six minutes.

Also: the module audit manifest is regenerated (91 load-bearing, 7 standalone,
0 orphaned) because evidence.py is now imported by the scan, and the
failed-query test is order-independent since the evidence pass records its own
failure before taint's.

869 tests pass; query compile test 4 passed; gates byte-identical.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-10 18:22:18 +02:00
Marius CiepluchandClaude Opus 5 4f5053bae1 feat(cpg): let the field half be switched off, so its cost can be attributed
A cost you cannot switch off is a cost you cannot attribute. The hook half
already disables itself when `hookCallbacks` is empty; the field half had no
equivalent, which made "what do the two-stage joins cost" unanswerable except
by editing the query -- measuring through a modified instrument, which this
project has been burned by twice already.

`fieldSources` defaults to ON when the field is absent, so nothing about the
shipped behaviour depends on a caller remembering to set it.

850 tests pass.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-10 11:17:42 +02:00
Marius CiepluchandClaude Opus 5 d63be34451 fix(cpg): ask the graph before splitting it, not the frontend's log
Sharding was triggered by `Failed to process` warnings. Those warnings are not
evidence about the finished graph:

    a build reporting 2 drops  ->  3 files, 139 methods, same size as a clean one

The file it warned about was in the graph the whole time. Acting on the
warning is not merely wasteful, it is destructive -- shards cannot see each
other's flows, so splitting a two-file WordPress pair on a false alarm cost it
CVE-2022-25148 outright. That is how this was found: the slices caught it, at
a scale small enough to check by hand, before the whole-repository run could
bury it.

So the build now takes a census of the graph (`census.sc`) when the frontend
warns, and splits only if the graph is actually short of the files handed to
it. A warning is a symptom to investigate, never a verdict. Conservative in
the only direction that matters: if the census cannot be taken, the caller
does the careful thing and splits.

    wp-vuln        3 entailed incl. CVE at :225, NO shard   (was: 2, sharded)
    wp-fixed       2, that one absent
    mwwpform       1 / 0
    pmpro one-file 18 incl. CVE at :936
    pmpro slice    18 incl. CVE at :936, sharded -- genuinely deficient here

The census costs one JVM, and only on a build that warned; a clean build pays
nothing.

849 tests pass; gates byte-identical.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-10 08:28:42 +02:00
Marius CiepluchandClaude Opus 5 7f83977add perf(model): stop sending 42MB of the same string, and stop enumerating for nobody
Two defects the first whole-repository scan made visible. It ran for 23
minutes over Paid Memberships Pro and decided nothing.

**The batch was 97.5% duplication.** `hookCallbacks` describes the REPOSITORY,
not the region, and I put it in every request when the hook half landed. On a
637-file plugin that is 16,270 characters repeated across 2,500 requests:

    taint-requests.json   42.5 MB, of which 41.7 MB is one string over again

Joern parsed that with ujson inside a 2GB heap and the batch died in
ForkJoinPool. The driver reported `query_failed` for all 2,500 regions, which
was the honest answer to a question that never should have been asked that
way. Repository-wide fields are now hoisted to a single `--param`, and only if
they are identical across the whole batch -- a field that genuinely varies per
region stays where it belongs.

**Arbitration spent 737 seconds enumerating candidates nobody would read.**
Candidates exist to be put to the judge, and `scan_region` discards them the
moment there is no judge to put them to -- but the driver enumerated them
first regardless, parsing each region's file once per family. With the budget
at zero model calls that is 2,500 parses whose results are dropped on arrival.

    build 264.8s   query 401.3s   arbitrate 737.3s   total 1403s

Nobody should pay for a question nobody will ask.

848 tests pass; gates byte-identical.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-10 08:18:17 +02:00
Marius CiepluchandClaude Opus 5 9cce5a3181 feat(cpg): give the files a frontend refuses a CPG of their own
A dropped file is dropped from the ONLY graph there is, so every question
about it has no answer -- which is how a 637-file plugin became a scan of
nothing. But those files build perfectly well alone: the failure is
per-invocation, not per-file. So a file the main build refuses is excluded
from it, given a second CPG, and both are queried with rows concatenated per
request id.

    pmpro two-file slice   before: cpg_empty, 0 findings
                           after:  18 entailed incl. CVE-2023-23488 at :936,
                                   reported with cpg_sharded

What this does NOT buy is a flow that crosses the shard boundary: a source in
the excluded file whose sink is in the rest of the tree is invisible to every
question asked, and no merging of results recovers it. That is why the split
is REPORTED rather than quietly served as if it were whole.

The excluded-file tree is symlinks at the original relative paths. A region
asks about `classes/class.memberorder.php` and the queries match a filename by
suffix, so a flattened copy would cheerfully answer about a file nobody asked
about.

Reports gain "What could not be analysed", rendering cpg_sharded, cpg_empty,
files_unparsed, query_failed and budget_exhausted in the reader's terms. A
degradation is a fact about coverage, not a warning to file away: silence in
the coverage table means "no fact table covered this", and silence about an
empty or split graph means something else entirely.

Also removes the WordPress vocabulary from the query, which was the other half
of this request. `apply_filters` was a hardcoded Set in taint.sc and
`add_action|add_filter|add_shortcode` a hardcoded alternation in mapping.py.
Both are now a `[[dispatch]]` fact:

    [[dispatch]]
    id = "wordpress_hooks"
    register = ["add_action", "add_filter", "add_shortcode"]
    apply = ["apply_filters", ..., "do_action", ...]

The shape is general -- a registry keyed by a string literal at both ends, as
Django signals, jQuery events and Symfony's dispatcher all are -- so a second
framework is a row in a TOML rather than an edit to a query. `dispatch_apply`
is empty for every language that declares none, and the hook half then does
nothing at all rather than looking for names that mean nothing there.

848 tests pass; gates byte-identical. wpstatistics 3/2 with the CVE at :225 on
the vulnerable side only, mwwpform 1/0, pmpro 18/1, VAmPI 4 unchanged.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-10 07:32:20 +02:00
Marius CiepluchandClaude Opus 5 d6908f18ba feat(cpg): the hook half — CVE-2022-25148 found across an add_filter/apply_filters edge
The last of the three WordPress flaw classes 5.8 measured as missed. The
value crosses a registry inside WordPress core:

    add_filter('wp_statistics_current_page', array($this, 'set_current_page'));
    return apply_filters('wp_statistics_current_page', $current_page);

php2cpg drops the callback argument entirely -- the CPG holds
`add_filter("wp_statistics_current_page", )` -- so the edge cannot come from
the graph at any price. It comes from the source text instead, where both ends
are literals, via `mapping.php_hook_callbacks`.

                 vulnerable                              fixed
  wpstatistics   3 entailed, incl. pages.php:225:record  2, that one absent
  mwwpform       1 ($this->attachments)                  0
  pmpro          18, incl. CVE at :936                   1
  VAmPI          4                                       unchanged

The correctly-prepared sibling query one line below the CVE is not flagged on
either side.

Four things this cost, each measured rather than guessed:

  * Half one must be asked per ARRAY KEY, not per callback. "Does an
    unsanitized value reach this callback's return" is TRUE on both sides: the
    fix escapes `type` and `id` and leaves `search_query` alone. A
    callback-level answer flags the fixed side as readily as the vulnerable
    one, which is a leak, not a detection. The key is a literal at both ends,
    so it joins the way the hook name and the field name do -- the same idea
    for the third time.

  * The sanitizer test had to stop crediting a sibling's cleansing. The
    vulnerable query is ONE concatenation holding both `esc_sql($page_uri)`
    and the injectable `{$current_page['id']}`, so asking whether a
    sanitizer's name appears in a path element's text marked the whole flow
    sanitized. An element must now BE the cleansing -- a call to it, or its
    name as a string literal, which keeps `array_map('esc_sql', ...)` working.

  * Hook seeds are repository-wide where field seeds are file-scoped. A hook
    registry is global by construction: the callback is in one file and its
    `apply_filters` in another. The query returned nothing until those two
    scopes were separated.

  * `sourceKind` had to be REPORTED, not inferred. By the time a row reaches
    Python a hook source reads as `$current_page["id"]` and a parameter as
    `$args`, and `_usable_flows` discards parameter flows whenever a modelled
    one is present -- so seven sanitized `$_SERVER["REQUEST_URI"]` flows
    displaced the CVE between the query and the verdict. That preference then
    had to move PER SINK SITE: applied across a region it decides one site's
    question with another site's evidence, and PMPro's CVE at :936 vanished
    from a region still reporting fifteen other findings.

`verdict` now delegates to `verdicts` rather than running its own selection
over the union, because two copies of "which flow decides" is exactly the
duplication this module has been bitten by before -- and had been again: the
per-site preference did not reach the single-verdict path, so the two entry
points disagreed about the same rows.

841 tests pass; gates byte-identical; VAmPI unchanged.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 20:42:35 +02:00
Marius CiepluchandClaude Opus 5 dcdbe322a1 feat(cpg): taint a field where it is assigned — the field half of 5.11
`_delete_files()` takes no parameters. CVE-2023-6559 arrives as a FIELD,
written by one method and read by another:

    public function __construct( ..., array $attachments = array() )
        $this->attachments = $attachments;          // half one ends here
    protected function _delete_files()
        foreach ( $this->attachments as $file )     // half two starts here
            unlink( $file );

Both halves were already in the graph. Only the join was missing, and the key
it joins on is the literal `$this->attachments`, written identically at both
ends -- so this is a second question asked with the query that already exists,
not an edge a frontend has to invent.

A read of `$this->F` is a source when some assignment to the same literal
`$this->F` in the same file is fed by an unsanitized flow from a seed. Scoped
three ways so a field name common to every class ever written cannot become a
wormhole: only fields the sink scope reads, only assignments in the same file,
and the right-hand side must itself be reachable from a source.

The receiver could then leave `parameterNodes` -- the precision fix refused
two commits ago, now sound, because the path it was standing in for is carried
by the field it actually travels through:

                          before                     after
  mwwpform vulnerable     1, from `this`             1, from $this->attachments
  mwwpform fixed          0                          0
  pmpro vulnerable        15 -- 4 named, 11 receiver 18 -- all named or field
  pmpro fixed             1, receiver-sourced        1
  VAmPI                   4 entailed                 4 entailed, unchanged

CVE-2023-23488 is still at class.memberorder.php:936 and CVE-2023-6559 at
class.mail.php:259. Every finding now names the value it followed instead of
naming the object.

Three things cost a measurement each, recorded in the task:

  * A summary must carry the SANITIZATION status of the half it summarises,
    not merely its reachability. Without that clause,
    `$this->sqlQuery = "..." . esc_sql($x) . "..."` reads as tainted -- and
    PMPro builds most of its queries that way, so the fixed side went from 1
    finding to 13. That is the pair no longer separating, which is the only
    number that matters.
  * Two-phase `reachableBy` then `reachableByFlows` is SLOWER, not faster:
    183s -> 256s. Running the analysis twice costs more than skipping path
    reconstruction saves. Reverted.
  * Memoizing per field rather than per file took it to 97s, about 1.6x the
    pre-field cost for that class, because only fields some region reads are
    worth the flow query.

`inScope` is factored out of `sinkCalls` so the field sources are scoped to
exactly the same place as the sinks, rather than a second copy of those three
branches drifting from the first.

841 tests pass; gates byte-identical; VAmPI unchanged.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 19:42:20 +02:00
Marius CiepluchandClaude Opus 5 45cf43e625 fix(cpg): one method with no sources must not cost the whole batch its answers
`reachableByFlows` on an empty source list is not a no-op. Joern answers it by
logging

    [INFO ] Attempting to determine flows from empty list of sources.

to STDOUT -- while the script is running, so the line lands between the fence
markers, ahead of the payload. `json.loads` then fails on the whole document
and the driver reports `query_failed` for every request in the batch. One
method with nothing to trace from silently cost the answers for all 205 of
the others.

Fixed at both ends, because either alone leaves the seam brittle:

  * taint.sc skips the flow query when there is no source to trace from, which
    is also the correct thing to do with the question.
  * `extract_payload` starts a decode at each line that opens a document and
    keeps the first that parses. Trimming to the outermost brackets is the
    obvious approach and the wrong one -- `[INFO ]` brings its own bracket.

Found while testing whether `$this` belongs in parameter sources. It does not
belong there on the argument -- the receiver is the object, not request data --
and excluding it cuts Paid Memberships Pro's order class from 16 entailed
findings to 6, all sourced from a named parameter, and makes the 2.9.7/2.9.8
pair separate cleanly.

It also loses CVE-2023-6559: MW WP Form's `_delete_files()` takes no
parameters at all, and the attacker-controlled path arrives as
`$this->attachments`, assigned by another method. So the trade is a VERIFIED
CVE against findings merely suspected of being false, and it is refused. The
receiver stays, with the measurement written next to it. The real defect is
field-sensitivity -- a field should be tainted where it is assigned -- and
deleting the receiver removes the symptom by removing the evidence.

841 tests pass; gates byte-identical.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 18:30:41 +02:00
Marius CiepluchandClaude Opus 5 e0442d146c fix(cpg): a graph the frontend emptied must not read as a clean repository
Scanning a two-file WordPress slice returned 64 regions examined, zero
findings and zero degradations. The graph it examined had no methods in it.

php2cpg 4.0.623 feeds several files to one `php-parse` process and reads its
stdout and stderr merged. php-parse writes a `====> File <next>:` banner to
stderr the moment it starts the next file, while the previous file's JSON --
megabytes of it -- is still draining from a block-buffered stdout. The banner
lands inside the JSON, ujson reports

    expected json value or } got "=" at index 5011645

and the frontend drops that file. Reproducible on real plugin code, and the
size that matters is one file's AST dump, not the repository's:

    class.memberorder.php alone (1834 lines)     -> 142KB CPG, no failures
    the same file + a two-line file              ->   5.7KB CPG, BOTH dropped

One oversized file empties the whole graph. `joern-parse` then does not
propagate any of the frontend's warnings: 13 lines of output, exit status 0,
"Successfully wrote graph". This is what made a 637-file plugin unscannable
and reported it as clean -- it was never a scale limit.

Two fixes, because the failure arrives on two different paths:

  * `_unparsed_files` reads the per-file warnings the frontend does emit, and
    the scan reports them as `files_unparsed`. This covers the direct-frontend
    path where the warnings are visible.

  * The batched query now carries a `__census__` of the graph -- method and
    file counts -- under a key no request id can collide with, and a scan over
    a graph with no methods degrades as `cpg_empty`. This covers joern-parse,
    which shows nothing. It rides the batch rather than costing its own
    invocation, because avoiding a JVM start is the entire reason batching
    exists.

Neither invents a verdict. There is no rung for "the graph was empty" because
the ladder labels verdicts and none was produced, which is exactly why it has
to be a degradation.

    pmpro two-file slice  before: 0 findings, degradations=[]
                          after:  0 findings, degradations=[cpg_empty]

Gates byte-identical; 840 tests pass.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 18:07:28 +02:00
Marius CiepluchandClaude Opus 5 92677136d7 fix(cpg): a batch goes through a file, not the command line
Scanning a 637-file WordPress plugin reported 500 regions examined, zero
findings, and a taint query time of **0.05 seconds** -- less than a JVM
takes to start. Dominance ran for 29.56s and config for 22.44s in the same
scan, so only taint had failed.

Linux caps a SINGLE argument at MAX_ARG_STRLEN (128KB) whatever ARG_MAX
says. Measured on that plugin:

  taint      2500 requests   1.49 MB   <- over the cap
  dominance    13 requests   0.04 MB
  config       13 requests   0.00 MB

As `--param requests=<json>` execve returned E2BIG, `_run` caught the
OSError, `query_batch` returned {} -- and {} reads as "no rows found". Only
taint crossed the cap, which is exactly why the failure looked like a
result rather than an error.

This is the quiet failure the rung ladder cannot catch. Every other honesty
mechanism in this codebase labels a verdict; here no verdict was produced
to label, and a scan of a vulnerable plugin reported it clean.

The payload is now staged to a file beside the CPG and the path is passed
instead; all three queries read `requestsFile` when it is set and keep
`requests` for the single-request forms and the tests. A test asserts no
argument approaches the cap, since the failure mode is invisible at the
scale the unit tests run at -- batching worked on every small tree it was
ever tried on.

Verified on vampi first: 4 entailed, unchanged, all three known
vulnerabilities still found.

Gates byte-identical.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 16:27:58 +02:00
Marius CiepluchandClaude Opus 5 c1191b3a6b feat(model): an access-control finding names a line, and what the PDG does not give us
contributor-scan 2.7. Taint and config verdicts have always carried a
`path:line:function` location; dominance never did, so every
access-control finding reached a contributor as
`api_views/users.py:?:update_password` -- the right file by accident,
because the region was asked about that file, and no line at all. The
query now reports the operation's file and the verdict carries the
location, with an engine that cannot report one getting no location rather
than an invented one.

Two questions answered by measurement while doing it.

**Does this factor in the PDG?** The data half, centrally: `reachableByFlows`
is the entire taint arbiter and `joern-parse` applies the `dataflowOss`
overlay. The control half, not at all -- and it is not available to us.
Measured: 0 of 13,184 calls in the libpng CPG and 0 of 1,152 in the vampi
CPG have a controlling control structure, so `controlledBy` returns nothing
in either. Everything guard-shaped therefore runs on CFG dominance or on
syntactic conditions, which is exactly why 2.12's first attempt failed:
libpng's bound reaches its sink through an `error` flag, and that is a
control-dependence fact and nothing else. Recorded as 2.14, including the
possibility that it cannot be enabled -- which would bound what guard
reasoning this engine can ever do.

**Would checking out a vulnerable libpng find a known CVE?** No, and not
because of the version. Every one of the twelve files using
`strcpy`/`strcat`/`sprintf`/`gets` is under `contrib/`; the library itself
uses none of them. libpng overflows through array and pointer arithmetic
and `memcpy` sizing, and five of its buffer-overflow fixes touch no
modelled sink at all. Pinning an older commit would produce the same
silence for the same reason.

That leaves two routes of very different size, recorded as 2.15: pin a C
project whose CVE genuinely runs through a string function, which is cheap
and would give the memory family its first true positive; or model how C
actually overflows, which is size arithmetic rather than sink matching and
should not be started by accident.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 13:09:47 +02:00
Marius CiepluchandClaude Opus 5 9221ba8e40 feat(model): a bound on the data lowers the rung, it does not clear it
contributor-scan 2.12. c/injection and c/memory carried zero sanitizers,
so no C flow could ever be discharged: every `argv -> strcpy` entailed
however carefully it was bounded.

Which sinks can be discharged this way is read from the sink fact's own
CWE rather than declared: CWE-121 is a stack buffer overflow, so
gets/sprintf/strcat/strcpy qualify. It is the only overflow CWE in the
fact tables and it is C-only, so no Python or JavaScript sink is touched
and the pair corpus is unaffected -- gates byte-identical.

Not a sanitizer list, because `strlen` appears in the guarded and the
unguarded case alike; the discharge is a guard, not a call.

**The first implementation required the bound to DOMINATE the sink, and it
found nothing.** libpng guards `strcpy(outname+len, ".png")` with
`(len = strlen(inname)) > 250`, but that check sits on an else-if chain
whose sibling branch skips it entirely, and the protection reaches the
sink through an `error` flag: `++error` in the guarded branch, `if
(!error)` around the copy. Joern's dominator set for that sink has 89
calls and correctly excludes the bound; `controlledBy` returns none
either. Verified against the CPG before the rule was changed rather than
after it failed.

So the bound is searched in the method, and the consequence is
corroborated rather than silence. That is the honest rung: a bound on this
variable means the graph has NOT shown the copy is unguarded, and it has
not shown it is guarded either -- off-by-one being how bounds fail. The
judge is asked. Proving the flag-mediated case needs path-sensitive
reasoning this arbiter does not do.

  libpng entailed   3 -> 1

The survivor is also a false positive: `strcpy(output + len, ".icc")` in
iccfrompng.c, where `output = malloc(len + 5)` makes it fit exactly. That
is a different discharge shape -- allocated to size, not bounds-checked --
and it is recorded as 2.13 rather than chased. Both shapes were found on
one repository, and extending a rule until that repository is clean is the
overfitting Req 8 exists to prevent; 2.13 requires a second C checkout
with a genuine CWE-121 so the change can be measured for what it silences
as well as what it clears.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 13:01:30 +02:00
Marius CiepluchandClaude Opus 5 67497c4d68 fix(cpg): a sink is matched as a word, not as a substring
`fgets` contains `gets`. The sink matcher's last clause was an unbounded
`methodFullName.contains(n)`, so every bounded read in libpng matched the
sink for the unbounded one. All 26 entailed findings on that repository
were the same false positive:

  *argv -> fgets(pnmline, 256, wpng_info.infile)   (line 335, 8 steps)

which is the safe API being reported as the dangerous one -- and `fgets`
is in the fact tables as a SOURCE, never a sink. Verified against the CPG:
methodFullName is exactly "fgets", and .contains("gets") is true.

Third instance of one bug class in this codebase, after the sanitizer that
matched `resolve` inside `resolveUrl` and the discharger that matched
`user` inside `users`. The sink matcher had never been given the same
treatment. All four of its clauses now run through the shared bounded
matcher, and that matcher is the punctuation-tolerant version written for
task 2.6 -- so `input(`, which an unconditional lookahead had made
unmatchable in `input(x)`, works for the first time as well.

  libpng entailed   26 -> 0

Zero is the right answer for a PNG library whose only known CVE is out of
family. Gates byte-identical, so no pair outcome depended on the substring
match.

What remains on that scan is recorded, not claimed: 113 `c-unsafe-*` rows
assert an API is present rather than misused, and 50 overlay-coverage rows
are annotations rather than findings. 82 of the 113 are under `contrib/`.
Task 2.11 covers whether that band is worth putting in front of a
contributor at all; 2.10 already covers not scanning example code.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 11:43:00 +02:00
Marius CiepluchandClaude Opus 5 d15985f695 fix(model): a guard discharges the obligation it is a guard of
contributor-scan 2.6. Access control entailed 7 of 9 VAmPI handlers,
including three that do authorize and three the OpenAPI spec declares
public. Five separate defects, each invisible to a corpus of one-function
excerpts and each found by asking the query what it actually matched.

**A trailing segment is not a match.** `query.get` was matched by its last
segment, so every `.get(` in the repository became a protected database
operation -- `request.headers.get('Authorization')` and
`request_data.get('username')` included. Four of the seven false positives
came from this, and so did the apparent detection of the known BOLA: it was
entailed because fetching the Authorization header had no dominating guard,
not because of the defect. A qualified token now requires its qualifier.

**Configuration is not authorization.** dominance_specs took every
obligation fact. `security_setting` operations are discharged by a VALUE,
which config_specs already claims them for; pooled in here they made
`app.run(...)` an operation requiring an authorization guard and put
thirteen tokens in BOTH lists -- an obligation that is its own discharge,
the same shape as the taint sink that used to sanitize itself.

**Input validation is not authorization.** `jsonschema.validate` was
counted as a guard, so handlers with no authorization check at all read as
guarded. No operation in the table requires validated_input.

**A guard discharges the obligation it is a guard of.** The largest one.
`orm-read` requires an identity_constraint or an ownership_check;
`token_validator` is a path_guard. Flattened into one list, authenticating
the caller discharged an object-level obligation -- a handler that
authenticates and then looks the record up by a PATH parameter read as
fully guarded. The facts state that relation and the spec was discarding
it; it is now carried and the engine asks per operation.

**A word boundary needs a word.** Found while fixing the above. Guard
matching wrapped every token in `(?<![A-Za-z0-9_])...(?![A-Za-z0-9_])`.
The identity token `['sub']` begins with `[`, and the character before it
in `resp['sub']` is `p` -- so the assertion could never hold. Every
identity token starting with punctuation was unmatchable, and the identity
constraint that separates a correct lookup from an IDOR was invisible.

Also: dominance rows were repository-wide, so the model's unguarded
`delete_user` was attributed to the API handler of the same name. Rows are
scoped to the region's file, which is what the rung's own justification
says -- the evidence is a file contradicting itself.

Measured against VAmPI's OpenAPI `security` blocks, which declare per
operation whether auth is required, and agree with the code:

  vampi precision   28.6% (2/7) -> 50.0% (2/4)
  known found       3 of 3, all model_entailed

And on the labelled access-control pairs, which nobody tuned this against:

  all 9 pairs       pair_correct 3 -> 3, leak 44.4% -> 11.1%
  7 non-VAmPI       pair_correct 2 -> 2, leak 42.9% -> 0.0%

Every detection lost was on a pair whose FIXED side was flagged too, which
scores nothing. No correct detection was traded for the precision.

get_by_title was flagged before it was in the recipe: its code carries the
comment "# Broken Object Level Authorization" and the README lists it, so a
real finding was being scored as a false positive. It is now the recipe's
third known vulnerability.

Both remaining false positives are endpoints the spec declares public.
Recorded as 2.8, with the reason the mapper's access_level cannot simply be
trusted: for decorator frameworks "public" means "no decorator found",
which is the bug itself.

Gates byte-identical.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 11:02:48 +02:00
Marius CiepluchandClaude Opus 5 0fcd5feade feat(model): a region for the code that is in no function
contributor-scan 2.5. VAmPI's `host='0.0.0.0'` is now reported exactly
once, at app.py:17:<module>. Before task 2.2 it was reported eight times
in eight files that do not contain it; after 2.2 it was reported nowhere.

Two causes, one shape: nothing could ask about module-level code.

**The main-guard marker is not a function.** `__main__` is what the mapper
emits for `if __name__ == '__main__':`. Sent to the engine as a function
name it matched nothing, because a CPG calls a file's top-level code
`<module>` -- verified against the VAmPI CPG rather than assumed. The
region model translates the marker, which is the one place that turns what
the mapper meant into what the scanner asks.

**A function-scoped file had no region for its module body.** Settings,
route registration and globals live in no function, and every region's
query filters by function name. A file-level region beside the handlers
would report each handler's findings a second time, which is why the
earlier rule dropped it as "a second full-file pass". A module-scope region
PARTITIONS the file instead of overlapping it. That only became cheap after
batching: before it, a region was a JVM.

Two things this needed to be correct rather than merely present:

- A module method spans its whole file, so the taint query's line-range
  containment made `<module>` the parent of every function in it. Under
  module scope, membership is direct -- otherwise the module region reports
  every handler's sinks again, which is the duplication the old rule was
  avoiding.
- A module body is not a handler. The marker-derived region inherited the
  handler families and entailed a missing authorization check on the main
  guard: a finding with no possible remediation. Caught by the first
  repository run that had the region, and now covered by a test.

  bind address   8 wrong files -> 0 -> 1, at app.py:17:<module>
  regions        22 -> 25
  entailed       8 -> 9
  query time     37.4s -> 41.3s
  peak RSS       827MB -> 823MB
  cost           $0.0067 -> $0.0068

Three more regions for four seconds and no more model calls: the budget is
a total and was already spent, so regions_unasked rose 17 -> 20 -- those
regions got the free pass and are reported as unasked, not as clean.

`<module>` is Joern's Python name for a module body; JavaScript uses
`:program`, so this is verified for Python only.

Gates byte-identical.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 09:43:53 +02:00
Marius CiepluchandClaude Opus 5 ca7b5ba370 feat(model): a region that spans the flow, not just a function
contributor-scan 2.4, closing the no-go task 2.2 recorded.

VAmPI's SQL injection is a request parameter reaching `get_by_username`
in api_views/users.py, passed to `User.get_user` in models/user_model.py,
interpolated into a query string and executed there. Source and sink are
in different functions and different modules. Regions were per-function,
so neither region saw both ends and the engine was silent on the most
ordinary shape a real injection bug has.

`reachableByFlows` was never the limitation -- it follows calls already.
The limitation was the QUESTION. Sinks were filtered to the labeled
function's own body, so a crossing flow had no sink to end at.

Three changes, each with a reason it is sound rather than convenient:

**An entry point is the trust boundary.** parameter_sources was off for
repository scans because a repository's parameters are not all attacker
input. An entry point's are, by definition -- that is what makes it an
entry point. The driver turns it on only for regions the mapper found and
named, and leaves it off for walker fallbacks and for named functions that
are not entry points.

**Sinks may sit below the handler.** taint.sc admits sinks in methods
reachable from the labeled method through the call graph, bounded at
ENTRY_POINT_CALL_DEPTH = 3: handler -> service -> data access, which is
where these bugs live. Unbounded would make the question about most of the
repository rather than about this entry point, and make it unaffordable.

**The finding names the sink, not the asker.** A crossing flow ends in
another file and another function, so Verdict carries the evidence's own
`path:line:function` and the site uses it. Reporting
`models/user_model.py:73:get_by_username` would name a place that does not
exist: line 73 is inside get_user.

Also: labeled methods are now resolved by name AND file. `get_user` exists
in more than one module of a real repository, which a corpus of one-file
excerpts could never surface.

Measured on the same checkout and budget as 2.2:

  VAmPI-SQLI    missed -> model_entailed at models/user_model.py:73:get_user
  known found   0 of 2 before 2.2's fixes, 1 of 2 in 2.2, 2 of 2 now
  entailed      7 -> 8
  query time    40.9s -> 37.4s
  peak RSS      869MB -> 827MB
  cost          $0.0067, unchanged

Asking the bigger question cost nothing measurable here: file scoping and
call-graph following pull in opposite directions and roughly cancel at this
size. That is one 520-line repository, and VAmPI is now the repository this
change was developed against -- the exact overfitting shape Req 8 exists to
catch. The depth bound and the entry-point rule mean nothing general until
a checkout nobody tuned against says so.

Gates byte-identical.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 09:27:19 +02:00
Marius CiepluchandClaude Opus 5 177c7f3719 feat(model): first repository measurement, and the four things it found
contributor-scan 2.2. VAmPI at a pinned commit, scanned whole rather than
as excerpts, with benchmarks/repos/measure.py recording build time, query
time, arbitration time, peak memory, cost, unjudged regions, and whether
each known vulnerability was found and at which rung.

The corpus could not have found any of this. Every defect below needs a
repository to become visible, and three of them were invisible behind a
passing test suite.

**The batch path was unreachable.** query_batch was implemented, tested and
committed while CpgResult exposed only `run`, so the driver's capability
check found nothing and fell back to one JVM per region-family: the first
attempt at this measurement ran eighteen minutes on 520 lines, issuing
`--param function=` one at a time. Every test called query_batch directly,
so none of them noticed. CpgResult now carries run_batch and a test asserts
the capability is reachable through the object the driver is handed.
The earlier 275s->106s improvement attributed to batching came from region
deduplication alone.

**The budget stopped free work.** It bounds model calls, but was enforced
by breaking the region loop -- spending a paid limit to stop unpaid CPG
arbitration. 6 of 22 regions were examined and VAmPI's BOLA, which the
graph entails for nothing, was never reached. It now withholds the judge
only. 22 of 22 regions arbitrated, 17 counted as regions_unasked (silent
because unaffordable is not silent because decided), and the BOLA is
entailed by the model layer.

**A region with no function asked about the whole repository.** Sending
function="" matched every hit in the tree and the driver attributed that
answer to whoever asked: one `host='0.0.0.0'` in app.py became eight
identical entailed findings in eight files that do not contain it. Queries
now carry the region's file. Entailed findings 14 -> 7, query time
70.9s -> 40.9s. The single-request form stays unscoped so the committed
pair measurements remain reproducible.

**The JVM had no heap bound.** Joern claimed a quarter of physical RAM and
runs were killed under memory pressure at different points, so the numbers
described the host rather than the engine. -J-Xmx2048m by default,
OPENULTRASAST_CPG_HEAP_MB to raise it.

Also: arbitrated findings carried `function:line` where the report layer
read `path:line`, so every entailed finding reached a contributor with a
function name where its file belonged; and the witness line was parsed by
splitting on a comma, which produced sites like
`config.py:17): permissive literal '0.0.0.0':?`.

Reading: GO on one CPG per repository -- 6.2s to build, 177s end to end,
869MB, $0.0067, nothing infeasible. NO-GO on region-scoped taint as the
only shape: VAmPI's SQL injection runs from a handler parameter into a
function in another module, and a per-function region sees neither end.
That is the ordinary shape of a real injection bug, so it is recorded as
task 2.4 along with three smaller defects this run exposed.

Gates byte-identical.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 08:46:21 +02:00
Marius CiepluchandClaude Opus 5 c35426e186 perf(model): one Joern invocation per query kind, not one per region
JVM startup dominated a scan: a call per region per family put a ten-line
file at 275s over three regions, and would have put a thousand regions at
roughly fifty hours. The queries themselves are milliseconds once the CPG
is loaded, so the cost was almost entirely process starts.

scan_repository() is now collect -> batch -> arbitrate. The three .sc
scripts accept a `requests` JSON map and answer all of them in one run,
keeping the single-request form so the committed measurements stay
reproducible byte-for-byte. Arbiters are untouched: each is handed a
CpgResult whose `run` returns its own prefetched rows.

The batcher builds parameters by calling request_params() extracted from
taint.py, dominance.py and config_value.py rather than reconstructing
them. A second copy that drifts from the arbiter's is the exact shape of
the five family-assumption bugs the predecessor spec spent a session
finding; there is now one definition per family and the batcher borrows
it.

Regions are also deduplicated by (path, function), collapsing the
nameless entry-point rows that were producing `model:injection:?:10`.

Measured on the same ten-line file: 275s -> 106s, three duplicate
findings -> one `model:injection:ping:10`, rung unchanged at
model_entailed. Gates byte-identical.

Server mode is recorded as task 2.3, deliberately sequenced after the
repository measurement: whether the remaining ~100s floor is worth a
process model, a weakened subprocess seam and a Scala-evaluating HTTP
endpoint depends on a build-time-to-query-time ratio only 2.2 produces.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-09 07:57:35 +02:00
Marius CiepluchandClaude Opus 5 d651455d23 fix(model-grounded-detection): closure scoping, and the three bugs it uncovered
The group-4 finding: JavaScript is callback-heavy, so the method containing a
sink routinely is not the labeled function. `fs.readFileSync` inside the
callback passed to `fs.stat` has enclosing method `<lambda>0`, and filtering on
`sinkMethod == function` dropped it -- the whole path family measured 0/8.

Scope is now decided by line-range containment within the same file
(astParentFullName is empty for lambdas, so nesting is not readable there), and
reported as `inLabeledScope`; the Python side trusts that flag and keeps the
name comparison only as a fallback, so an engine that cannot report scope never
has its sinks silently treated as scoped. Parameter sources stay bound to the
labeled function's OWN parameters -- a callback's `err`/`stats` are not
attacker input.

Fixing the scope exposed three further bugs, each of which would have raised
the number while making the answer untrue:

  * Shortest-flow-wins picked the wrong witness. With closures in scope the
    same sink has flows from `req.url...` (10 steps, the vulnerability), `res`
    (3) and `this` (7). A flow whose source matches the source model now
    outranks a shorter one from a bare captured name; shortest still breaks
    ties, so the order stays total and the verdict deterministic.
  * The JS fact file had NO sanitizers at all, so no JavaScript fix of any
    family could ever be recognised. Added the documented path-normalisation
    and HTML-escaping APIs, with provenance.
  * Adding them regressed the witness, because `resolveUrl` CONTAINS `resolve`
    and the substring test marked the vulnerable flow sanitized. This is the
    same bug class already fixed in dominance.sc and not carried across -- the
    exact fix-the-instance-miss-the-class failure. taint.sc now matches on word
    boundaries too.

And the principled rule the fix turns on: parameter sources are a FALLBACK,
never an override. When a modelled source reaches the sink, those flows are the
evidence; otherwise a captured `res` reaching a sanitized sink reports the fix
as still vulnerable on a flow that names no attacker input.

Also recorded: req.url was NOT wrong as a diagnosis, it was untestable in
isolation -- the scoping bug masked it. Both were needed. On the pair that
motivated all of this:

  vuln   model_entailed      req.url.split('?')[0] -> readFileSync(possibleFilename)
  fixed  model_corroborated  same flow, sanitized by path.normalize
  distinguished: true

700 passing, mypy/ruff clean, gates byte-identical.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-08 16:24:23 +02:00
Marius CiepluchandClaude Opus 5 eebca3f663 fix(model-grounded-detection): the absence arbiter was silencing its own family
Two bugs, together making 4.1 report "no bug" on a textbook IDOR. Both found by
running it against a real corpus pair rather than a fixture.

1. constraint_params were treated as dischargers. A field named `user_id` is
   what an IDOR is MADE OF -- `filter_by(id=user_id)` with user_id off the
   request is the bug, not the fix. The deleted checker only counted an identity
   constraint whose value's PROVENANCE was the authenticated context, so the
   parameter name alone evidences nothing. This is the mirror of group 2's
   sanitizer bug: a thing that must never count as a discharge, counted.

2. Guard tokens matched as substrings. With `user` in the token list, the string
   "SELECT * FROM users WHERE id = ?" contains `user`, so the query reported
   every operation in the handler as guarded. Matching is word-boundary now.

On threatbyte-api-v1-delete the arbiter previously found three operations, all
"guarded" by evidence like '"SELECT * FROM users WHERE id = ?"' and '(user_id,)',
and returned no verdict at all. After the fix, on the real pairs:

  threatbyte-api-v1-delete     vuln=model_corroborated  fixed=none
  vampi-users-update-password  vuln=model_corroborated  fixed=none

Both distinguished, deterministically, with no model call. Corroborated rather
than entailed is right for these: they are single-handler excerpts with no
guarded sibling to be inconsistent with, which is the asymmetry the rung
distinction exists to express.

identity_sources still discharge; request_sources and permissive_values remain
excluded because they describe the vulnerable shape rather than the fix.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-08 15:10:51 +02:00
Marius CiepluchandClaude Opus 5 d9ceeb6a09 feat(model-grounded-detection): 4.2 constant abstraction, the third arbiter form
A configuration bug has no flow to follow and no guard to dominate.
CORS(app, origins="*") is dangerous because of the value it is SET TO, so the
arbiter evaluates the setting's arguments against the closed permissive set in
the obligation facts -- the third form beside taint reachability and guard
dominance, and the one Req 6.3 names.

  ENTAILED      a security setting is passed a literal in the permissive set
  CORROBORATED  the argument is computed, so constant abstraction cannot decide
                it -- that residual is the judge's, never silently "safe"
  (none)        every literal is outside the set, or the call is not a setting

Two Joern node-shape bugs, both found by running it and both of the same class
as group 2's receiver bug -- the graph's indexing is not what the source text
suggests:

  * a keyword argument (`origins="*"`) is an assignment-shaped node, so
    isLiteral is false on the argument itself and the literal sits in its
    subtree; literals are collected from the argument's AST now.
  * Joern indexes the receiver at 0, positional arguments from 1, and NAMED
    arguments at -1. Settings are configured overwhelmingly by keyword, so
    argumentIndexGt(0) -- correct when counting arity for the taint shape test
    -- dropped exactly the arguments that matter and every keyword-configured
    setting read as "computed".

Live, deterministic, zero model calls:
  create_app -> model_entailed  CORS(app, origins = "*"): permissive literal "*"
  safe_app   -> no finding      (origins = "https://app.example")

All three arbiter forms now work against a real CPG: taint reachability for the
flow families, guard dominance for absence, constant abstraction for config.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-08 15:00:41 +02:00
Marius CiepluchandClaude Opus 5 fec67253f3 feat(model-grounded-detection): 4.1 guard dominance, 4.2 the missing sink facts
4.1 is the arbiter for the class no crash oracle reaches. An access-control bug
is the ABSENCE of a guard: no flow to follow, no crash to reproduce. What the
model can establish is a consistency violation -- an obligated operation no
discharging guard governs, in a file where its siblings are governed by one.

"Governed" turned out not to be one relation, and asking pure CFG dominance of
the operation gets two of three shapes wrong. Measured against the real engine:

  identity constraint  the guard is INSIDE the operation's arguments
                       filter_by(owner_id = current_user.id)
  identity branch      abort(403).controlledBy == [note.owner_id != current_user.id]
                       -- the check runs AFTER the fetch, so it never dominates
                       the operation, but it controls whether the value escapes
  dominating guard     a discharger-naming call that dominates the operation

That is why the query uses controlledBy rather than dominatedBy for shape 2.

Two bugs found by running it, both the same class as the sanitizer bug in group
2 -- part of a fact flattened, the part carrying the signal dropped:

  * dominance_specs used only `calls` and `decorators`, omitting
    identity_sources (current_user, request.user) and constraint_params
    (owner_id, user_id) -- which is how an identity constraint is actually
    written. The arbiter reported "no guard" on handlers that plainly had one.
    request_sources and permissive_values stay excluded: they describe the
    vulnerable shape, and including them would let the arbiter read a bug as
    its own fix.
  * matching operations by code containment yielded four or five desugared rows
    per operation (the bare `tmp1.filter_by` receiver among them, carrying none
    of the guards the real call has), so a guarded operation could be flagged.
    Matching is by call name now.

Live, deterministic, zero model calls:
  leaky      -> model_entailed  no discharging guard, while 2 sibling handlers are guarded
  edit_note  -> no finding      (ownership check controls the denial)
  list_notes -> no finding      (identity constraint in the query)

4.2 authors the sink facts the go/no-go measured as its largest miss class (11
of 23): Django ORM raw SQL, and the four families that previously had no fact
routing to them by CWE at all -- path, output_encoding, untrusted_destination,
prototype. Each entry is a documented dangerous API of the named library with
its provenance recorded inline, and rule_ids left empty because a sink fact is
not a detection rule. Flagged for maintainer review as data, given the standing
"no LLM-authored patterns" constraint. The exact-set assertion written in task
1.1 to hold this gap open is updated rather than deleted, so it still fails if a
family ever loses its seed.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-08 14:45:12 +02:00
Marius CiepluchandClaude Opus 5 e127e430ed feat(model-grounded-detection): parameter sources, so the measurement is like-for-like
Only 11 of the 50 injection pairs contain a framework source token at all. The
other 39 receive untrusted input as a FUNCTION PARAMETER, because SVEN-style
pairs are function-level extractions:

    def add_user(username, password):
        os.system("useradd ... -p " + encPass + " " + username)

A framework-anchored source model finds nothing there, which caps entailment on
this slice near 22% by construction -- a property of the source model, not of
the engine. More to the point, the flat-IR baseline this feature is measured
against already counted these (source_kinds: ["parameter"]), so a run without
them is not comparable to the 2.2% it is supposed to beat.

The flag is opt-in and off by default, because the two settings are right in
different places: in a function-level pair the function boundary IS the trust
boundary, while across a whole repository most parameters carry internal
values and treating them all as untrusted is not sound. The corpus harness
opts in; a repository scan does not.

On the pair that exposed this the model now resolves both flows, including one
through an intermediate binding:
    username -> os.system(...)                       2 steps
    password -> crypt.crypt(...) -> encPass -> ...   7 steps

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-08 12:56:13 +02:00
Marius CiepluchandClaude Opus 5 1765e51da1 feat(model-grounded-detection): the safe-shape test, without which the model arbitrates nothing
The first live run produced the finding that shapes this design: taint
reachability alone does not distinguish a fix from a bug. On the canonical SQL
pair the flow request.args["name"] -> name -> execute exists on BOTH sides --

  vuln   db.execute("select ... '" + name + "'")   one argument, interpolated
  fixed  db.execute("select ... = %s", (name,))    two arguments, bound

-- so the model entailed the fixed twin exactly as readily as the vulnerable
one, and arbitrated nothing. What separates them is the SHAPE of the sink call,
which is precisely what safe_shape_sinks preserved from the earlier sanitizer
fix. The query now reports sinkArity and sinkArg0Literal, and a flow ending at
a sink written in its declared-safe form is not a vulnerability.

Two bugs in that shape test, both found only against the real engine:
Joern's `call.argument` includes the RECEIVER at argumentIndex 0, so `db` was
counted as an argument -- making a one-argument interpolated call look like a
two-argument bound one, the exact inversion of the test -- and the "first
argument" whose literalness decides a format-string sink was the receiver
rather than the format. Both fixed with argumentIndexGt(0).

The rule is narrow on purpose: only sinks named in safe_shape_sinks are subject
to it (os.system(x) is not safe merely because it takes one argument), and a
row carrying no shape fields is judged on the flow alone -- an unknown shape
must never be read as a safe one.

End to end on the pair, deterministic and with no model call:
  vuln  -> model_entailed  request.args["name"] -> db.execute(...) (line 4)
  fixed -> None

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-08 12:51:42 +02:00
Marius CiepluchandClaude Opus 5 f59e0f5b5a fix(model-grounded-detection): two modelling bugs the first live Joern run exposed
Both were found by running the real engine, and neither was visible offline.

1. A sink was its own sanitizer. The shipped facts mark some sanitizers with a
   *shape* qualifier -- parameterized ("execute(sql, params) binds rather than
   interpolates") and literal_format_arg ("printf with a constant format string
   is safe"). These describe a safe FORM OF THE SINK CALL, not a call that
   cleans a value on the path. Flattening them into the sanitizer list made
   `execute` both the injection sink and its own sanitizer, so every SQL flow
   would have reported as already-clean and nothing could ever be entailed.
   Fixed as a class, not an instance: any fact carrying a shape qualifier is
   excluded from `sanitizers` and kept in `safe_shape_sinks` for the shape test
   task 4.2 will model properly. Fixing only the Python `parameterized` case
   would have left C's entire printf family -- which the generalised test then
   caught immediately.

2. labeled_family lost its deterministic derivation in group 1. The deleted
   classifier resolved a pair's family by declared label, else obligation, else
   mechanism, else CWE, and only asked an LLM when every link failed -- which
   for a labeled corpus was never. Group 1 reduced this to the declared label
   alone, which silently emptied every family whose pairs are labeled by CWE:
   the injection slice went to zero pairs. The chain is restored, still with no
   model call, and the family census again matches the committed entailment
   ceiling exactly (injection 50, memory 176, access_control 8, ...).

Also: the Joern seam now runs in the CPG's own scratch directory, because
`joern --script` writes a `workspace/` beside the working directory and would
otherwise leave one inside the repository being analysed.

The taint query itself was corrected against the live engine: the sink is the
call's ARGUMENTS (data flows into arguments, not into the call node) and
reachableByFlows is called on the sink with the source. With that, the
three-hop chain our flat IR could not resolve is found:
  request.args["cmd"] -> cmd -> "echo " + cmd -> full -> os.system(full)

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-08 12:45:42 +02:00
Marius CiepluchandClaude Opus 5 2b973dc0db feat(model-grounded-detection): tasks 2.1-2.2, the Joern seam and the taint verdict
The whole engine integration is one subprocess boundary: joern-parse builds a
cpg.bin, joern --script runs a shipped CPGQL query that prints its JSON between
fence markers, because Joern's stdout carries a banner and a REPL prompt around
whatever a script emits. Nothing is imported in-process, so the core install
keeps dependencies = [] -- a test walks the seam's AST to assert it imports
only the standard library and names no JVM binding.

Fail closed everywhere. A build or query that errors, times out, or prints
something unparseable yields no verdict and the caller reports suspicion. The
taint verdict distinguishes this from absence deliberately: a query returning
None means "the engine could not decide", which is not "there is no flow", and
conflating them is how a missing engine silently becomes a clean bill of health.

The verdict is where the ladder earns its keep. An unsanitized source->sink
path is model_entailed -- the graph establishes it and the LLM's claim is no
longer load-bearing. A path a sanitizer may break is model_corroborated: the
flow is real, but whether the sanitizer suffices is the semantic residual the
LLM answers, checked against this verdict rather than averaged over runs. The
chosen flow is picked by a total order (shortest, then lexicographic), so two
runs over one CPG cannot disagree -- Req 6.4 asserted directly.

The query itself is the part our flat IR could not do: reachableByFlows walks
the PDG, so `q = "..." + request.args["x"]; execute(q)` is found, which is
exactly the one-hop limit that held measured entailment at 2.2%.

Capability detection reuses semantic/engines.joern_available rather than
growing a second notion of "installed". The audit manifest is regenerated; the
new modules are named by Req 4/5/6 rather than counted as orphans.

Task 2.3, the go/no-go measurement, needs Joern installed and has not run.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
2026-09-08 12:23:40 +02:00