Commit Graph
928 Commits
Author SHA1 Message Date
Marius CiepluchandClaude Opus 5.5 6d27c9bfcf unseen-eval: calibrated replay deadline + native agreement check, docker-lane diagnostics, proof 4.4 record; engine runner cleans up fetched sources
gVisor replays exhausted the hook's 30 s deadline in the snapshot step on a
1,725-file repository; cluster replays now use 30 s x a measured slowdown
factor, verified on a native sample. The engine runner deletes each pin's fetched
source (1.8 GB had accumulated), caps the cache at 500 MB and refuses below
1.5 GB free. Proof 4.4: two engine pins via the generic dispatcher match the VM
baseline exactly. Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-05 08:14:57 +02:00
Marius CiepluchandClaude Opus 5.5 5dc86c2f3f merge(unseen-eval): groups 1-2 and 4-6 -- used set, sourcing with resume, AX batch dispatcher, replay task, scorer
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 20:28:15 +02:00
Marius CiepluchandClaude Opus 5.5 c6e87a8517 unseen-eval groups 4-6: generic AX batch dispatcher (engine_trace on it), replay task and image stage, scorer with adoption gate
Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 20:19:14 +02:00
Marius CiepluchandClaude Opus 5.5 48ae918dec unseen-eval group 2 (2.1-2.4): advisory sourcing, vulnerability-introducing ranges, ordinary-commit draw, draft manifest and slices; journal with resume
Implemented with Codex. Sourcing run (2.5) next, by the coordinator.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 19:51:30 +02:00
Marius CiepluchandClaude Opus 5.5 8213d3baad unseen-eval group 1: used set (1,029 repositories, every source read), extended guard, usage ledger; record 01
Implemented with Codex; task 1.5 run by the coordinator against the real
sources (S3 memory read-only).

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 19:17:35 +02:00
Marius CiepluchandClaude Opus 5.5 60512fff88 spec(unseen-repo-evaluation): design and tasks approved; run through the baseline
Decisions: long-deadline arm (300 s), adoption needs no unseen regression
(Req 5.4), permissive repositories by name only, two AX lanes. Also adds the
trained-classifier and joint-optimisation arms to learned-decision-engine.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 18:48:13 +02:00
Marius CiepluchandClaude Opus 5.5 d4467f4236 steering: roadmap re-centred on generalisation to unseen repositories (G0-G5); specs updated; unseen-repo-evaluation brief and requirements (approved)
Maintainer 2026-10-04: the safety net is for unseen code and the A/B tests exist
to prove the approach generalises; infrastructure work had drifted from that.
Runs are designed for AX on kube-ax, kind is the fallback.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 17:34:57 +02:00
Marius CiepluchandClaude Opus 5.5 ee422b63e0 spec(learned-decision-engine): fix-mechanisms plan approved -- discharge facts first, >=2 proposing repos, per language
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 17:25:35 +02:00
Marius CiepluchandClaude Opus 5.5 02b2cbf99c engine: retry a pin once when its AX sandbox dies, then hand it to the VM lane
Two engine actors died at gVisor level during a 12-pin run (AX phase Failed, no
result). Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 17:14:20 +02:00
Marius CiepluchandClaude Opus 5.5 eaf436d3db merge(engine): one resident Joern session per pin; ActiveProcessorCount=2 on the cluster
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 16:50:21 +02:00
Marius CiepluchandClaude Opus 5.5 187e3c14c5 engine: one resident Joern session per pin (frontend + one query JVM instead of four), ActiveProcessorCount=2 on the cluster
Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 16:41:22 +02:00
Marius CiepluchandClaude Opus 5.5 b715ff7d0e engine: stage presigned objects as .dat; task entry reports the failing step and HTTP status
Through Cloudflare, signed requests for keys ending .tar/.gz/.zip/.bin reached
RustFS altered and failed with 403 (cf-cache-status BYPASS); the same signed
request straight to RustFS on the LAN returned 200. A Cloudflare cache-bypass
rule on files.because-security.com fixes it (all extensions 200, DYNAMIC); the
engine executors keep .dat as a safeguard, the plane keeps output.tar.
Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 16:18:01 +02:00
Marius CiepluchandClaude Opus 5.5 035710493c merge(engine): AX-task executor for the kube-ax cluster
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 15:30:26 +02:00
Marius CiepluchandClaude Opus 5.5 abca40b072 engine: AX-task executor for kube-ax (engine-task image FROM ax-task-runner v0.3.1, presigned HTTPS I/O, ousast-engine- names, 60 s egress-ready retry, 1.7 GB cluster heap, VM OOM fallback)
Implemented with Codex. Live smoke pending the operator egress watcher.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 15:22:44 +02:00
Marius CiepluchandClaude Opus 5.5 afff080874 merge(engine): Kubernetes engine workers (Deployment from the image, S3 queue); leak-audit records carry digests, not repository names
The Joern leak-audit record named spent population v1/v2 repositories, which
the reserved-repository guard forbids outside benchmarks/independent/ (no v3
repository was involved: 0 matches). Records now carry counts and SHA-256
digests. With Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 14:39:36 +02:00
Marius CiepluchandClaude Opus 5.5 e174c06ee7 engine: worker Deployment from the image (S3 queue with leases, dispatcher --executor queue, engine-image workflow, scoped RustFS policy); merge main
Implemented with Codex. Cluster deploy pending the k3s kubeconfig and the scoped account.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 14:23:04 +02:00
Marius CiepluchandClaude Opus 5.5 8d6921d2df spec(learned-decision-engine): fix-mechanisms plan for review -- learn discharge facts from 710 fix diffs, admitted by held-out pair separation
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 14:11:41 +02:00
Marius CiepluchandClaude Opus 5.5 298bd17780 learn: Joern-slice leak audit on the completed trace run -- no leak; paths differ between pair sides in 2 of 105 both-asked pairs
Coverage 72 path, 231 asked-nothing, 9 failed, 189 unsupported. The engine
almost never distinguishes a vulnerable function from its fix, so a Joern-slice
prompt experiment is not funded; the lever is the engine's knowledge of fix
mechanisms.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 14:08:26 +02:00
Marius CiepluchandClaude Opus 5.5 6a2138fbef merge(ops): lean kind profile -- observability off by default on the server VM
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 12:13:32 +02:00
Marius CiepluchandClaude Opus 5.5 35ded61c85 merge(learn): harvest 3 -- 251 real fix pairs (advisory-fixes-3); complete pairs in memory 459 -> 710
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 12:06:16 +02:00
Marius CiepluchandClaude Opus 5.5 0d78d33fd2 ops(kind): skip Substrate's observability stack by default (930 MiB of 2.3 GB); opt in with OUSAST_KIND_OBSERVABILITY=1
A lean overlay omits otel-collector, prometheus and jaeger and disables the
exporters; on an existing cluster up.sh scales them to 0. Verified live: render
has no otel-system resources, up.sh idempotent (54 s second run), smoke Run
done, kind node 2.66 -> 1.82 GiB. Docs say server VM. Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 12:03:19 +02:00
Marius CiepluchandClaude Opus 5.5 cbc252553a learn: 251 more advisory-fix pairs whose function survives the fix (advisory-fixes-3)
Batch 3 of real (vulnerable function, fixed function) pointer pairs, mined at
zero model cost from reviewed GHSA advisories (pip, npm, maven, composer,
published since 2023, newest first). Same rules as batch 2, widened three
ways: a merged PR's single commit when the advisory links no commit, commits
up to 6 files / 240 lines, and two-family advisories with the family read
from the diff. Every candidate's function diff was read: 412 reviewed, 255
kept, 3 one-per-repository, 2 withheld by the reserved-population guard
(bisected with output discarded). Permissive licences only; no repository
named elsewhere under benchmarks/; no WordPress plugin.

Kept 251: injection 56, untrusted_destination 26, path 71, output_encoding
69, access_control 20, deserialization 9; python 83, typescript 48, php 46,
java 37, javascript 37. Only 12 post-cutoff: batch 2 had used up the
post-2026-06-01 pool. Memory 1133 -> 1635 static examples; complete pairs in
the whole memory 459 -> 710. Embeddings: 15 calls, $0.0030. No chat-model
call, no Docker, no Joern. Record:
benchmarks/measurements/2026-10-04-decision-engine-harvest-3.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 11:57:34 +02:00
Marius Ciepluch e555ba68dc Merge branch 'joern-leak-audit' 2026-10-04 10:53:23 +02:00
Marius CiepluchandClaude Opus 5.5 231dca1f04 merge: taint-query null-guard fix and trace-enabled engine runner
The query fix stops a class-level call from aborting the whole taint batch on
real PHP code; gate, map_gate and pair_gate outputs are unchanged. Trace parsing
lives with the runner (benchmarks/learn/engine_trace_parse.py).

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 10:53:23 +02:00
Marius CiepluchandClaude Opus 5.5 2e6ba93aee learn: Kubernetes executor for the engine trace runner (Jobs, presigned source/result via the S3 store, mixed lanes, --k8s-check)
Implemented with Codex; live cluster check pending.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 10:35:59 +02:00
Marius CiepluchandClaude Opus 5.5 431ab1e738 learn: engine_trace materialises catalog pairs without commits (dedented parseable excerpts, in-function scope), protects labelled files in exports, scopes large repos, records frontend diagnostics, retries the jssrc2cpg engine bug, writes progress.json
Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-04 08:19:46 +02:00
Marius CiepluchandClaude Opus 5.5 94ec4cef16 learn: Joern-slice leak audit (has-path, steps, sanitizer, guard, sink, asked; both-asked pairs; per-corpus AUC)
Implemented with Codex. The record is written after the trace re-run completes.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 23:03:52 +02:00
Marius CiepluchandClaude Opus 5.5 e492ebd16e fix(cpg): null-guard method access in the query scripts -- a class-level call aborted the whole taint batch
On real PHP source (CPS-IT/mailqueue) a call outside any method has a null
.method; inScope/nestedInLabeled dereferenced it (NullPointerException) and the
script exited 1, losing every taint answer for the repository. 16 sites in
taint/dominance/config/vocabulary.sc now treat a null method as out of scope;
non-null behaviour is unchanged (same outputs on the repro graph for the other
scripts). Static regression test added. Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 22:53:28 +02:00
Marius CiepluchandClaude Opus 5.5 41f56170bb learn: engine_trace worker renders request params through the production _render; records query stderr
The worker sent tuple params as JSON arrays; taint.sc expects comma-joined
strings (ujson InvalidData, exit 1). Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 22:41:54 +02:00
Marius CiepluchandClaude Opus 5.5 fe2a424018 learn: engine_trace fetches real source at the pinned commit, 2.5 GB JVM heap, one CPG per language
Root causes of the 50 failed pins in trace run 1: advisory pairs were fed as
excerpts (invalid Java/JS fragments), the JVM defaulted to ~768 MB heap in a
3 GB container, and mixed-language pins were refused. Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 22:36:23 +02:00
Marius CiepluchandClaude Opus 5.5 36a3355b81 learn: engine_trace guard judges frontends by their CPG, query steps by time and question markers
php2cpg legitimately finishes in ~2 s on small files. Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 19:22:37 +02:00
Marius CiepluchandClaude Opus 5.5 34d00391f1 learn: engine_trace container worker imports only the engine; dry-run writes nothing; resume keyed on selection
The 2026-09-14 engine image has no PyYAML or boto3; the worker no longer imports
learn.examples. Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 19:19:22 +02:00
Marius CiepluchandClaude Opus 5.5 19c936343b learn: trace-enabled Joern run over labelled units (opt-in trace in taint.sc, trace parsing, resumable runner)
Implemented with Codex. Default scan queries do not request a trace.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 19:10:47 +02:00
Marius CiepluchandClaude Opus 5.5 20777d8863 chore(audit): module audit gains learn.slice
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 17:04:33 +02:00
Marius Ciepluch 77e47ac7d3 Merge branch 'graph-slice' 2026-10-03 16:58:37 +02:00
Marius CiepluchandClaude Opus 5.5 094f6d226c learn: exp-005 graph slice -- inconclusive (within-pair AUC 0.762 -> 0.746, CI [-0.063, 0.032]); unsure rate 0.29 -> 0.24; fill \$1.59
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 16:58:37 +02:00
Marius CiepluchandClaude Opus 5.5 0acbc7ec41 learn: exp-005 graph slice -- slice in the prompt (opt-in), program-arm fill, manifest and units
Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 15:06:08 +02:00
Marius CiepluchandClaude Opus 5.5 1b2c7993a7 learn: in-function def-use slice from the tree-sitter layer + leak audit (\$0)
slice.py renders source -> step -> sink lines with fixed wording for flow,
no-flow and not-analysable; the prompt option is default-off (byte-identical
default prompt). semantic IR: JS/C declarations count as assignments, augmented
assignment keeps its target (gate, map_gate, pair_gate outputs unchanged).
Audit over exp-004's 501 units: 59 flow, 161 no-flow, 281 not analysable;
has-flow within-pair accuracy 0.52, pooled AUC 0.55 -- no leak. Fixes a
numbering bug that rejected every excerpt with a blank line. With Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 14:56:52 +02:00
Marius CiepluchandClaude Opus 5.5 463fe1503a learn: build_features reads v2 _a/_b scans and TypeScript repository-scan witnesses; --dry-run
Population v2 scans are named <case>--<side>_a/_b.json; the script looked only
for <case>--<side>.json and recorded those examples as engine not-run. The two
repeats combine symmetrically for both sides. Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 14:41:55 +02:00
Marius CiepluchandClaude Opus 5.5 2836b78819 merge(learn): exp-004 -- inconclusive, pooled top-30 precision 0.90; experiment fill command; registration fix
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 14:29:22 +02:00
Marius CiepluchandClaude Opus 5.5 6d9850578e learn: dry-run estimate from measured cached-response cost; docs: exp-004 result; tidy instrument check
The estimator priced all input at the full rate (\$5.58 estimated vs \$1.24
spent); it now uses the family mean billed cost of cached responses when usage
is recorded. Implemented with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 14:23:36 +02:00
Marius CiepluchandClaude Opus 5.5 b50f7afccb learn: exp-004 run -- inconclusive, no pooled t_block; fill \$1.24 of a \$2 ceiling, replay \$0; instrument check recorded
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 14:18:17 +02:00
Marius CiepluchandClaude Opus 5.5 90a2642019 learn: registered() returns the frozen registration, not the first row
A pending-then-frozen registration left two rows and rows[0] could be the stale
pending one, so fill and run refused a properly frozen experiment. Implemented
with Codex.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 12:42:39 +02:00
Marius CiepluchandClaude Opus 5.5 8aeca972c0 learn: freeze exp-004 units (501 units, 390 paired, 220 groups) after the negatives harvest; audit gains learn.fill
Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 12:36:02 +02:00
Marius CiepluchandClaude Opus 5.5 8d14b0c13f learn: experiment fill -- fill a rule experiment's response cache with a hard ceiling, dry-run estimate
Implemented with Codex; review fix: the bounded client keeps the configured
thinking setting so a fill answers as the run would.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
2026-10-03 12:35:27 +02:00
Marius CiepluchandClaude Opus 5.5 212a391872 merge(learn): cache fill and exp-004 registration -- pooled block gate with family floor, Req 6.4
Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-10-03 09:53:10 +02:00
Marius CiepluchandClaude Opus 5.5 da91ef0dd9 exp-003: supplementary all-units replay after the cache fill; exp-004 registered
Supplementary analysis, not a new decision: exp-003's verdict stands.
The 142 units excluded for an uncached response were filled with the same
six incumbent programs, parameters and request keys, on exp-003's
937-example memory (the harvest's 196 rows and its 2026-10-03 embeddings
left out; a zero-cost replay first reproduced exp-003 exactly: 211
decided, 1056 replayed, $0.582876). Fill: MeteredClient, ceiling $0.99
under the approved $1.00, 697 client calls, $0.331759, no provider error.

Replay on all 353 units (244 paired, 146 groups): 0 client calls, $0.0,
1768 responses replayed; no arm flags any unit, the registered rule reads
inconclusive. Calibration holds only for untrusted destination (ECE
0.0454) and arm A still finds no BLOCK point there.
benchmarks/experiments/exp-003-precision-bound-blocking/result-complete-cache.json

exp-004 registered in s3://sast-memory (manifest 87fceb65..., pin
2ad9c1d, units pending): benchmarks/experiments/exp-004-pooled-block-gate/
registration.json. docs/decision-engine.md: both, briefly.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-10-03 09:47:20 +02:00
Marius CiepluchandClaude Opus 5.5 2ad9c1db7a learn(exp-004): Req 6.4 pooled BLOCK gate with a family floor; manifest before units
Maintainer decision 2026-10-03: BLOCK precision is shown pooled across
families. Req 6.4 (amended; 7.4 annotated): one t_block on a per-family
Platt-normalised score (calibrate.fit_map, training folds, inner
cross-fit), Wilson 95% LB >= 0.95 over all families' training flags; a
family blocks only with >= F = 10 held-out flags and zero errors, else
advisory; t_quiet per family keeps >= 90% of training paired positives.

evaluate: normalised, pooled_threshold, quiet_threshold,
pooled_block_gate, family_floor, apply_floor. experiments: rule
pooled_block_gate (normalise: platt, floor, recall), decide_pooled on the
pre-floor pooled held-out LB, floor table, quiet_recall and after-floor
totals in analyse_rule; exp-003's analysis is unchanged.

plane/experiments/exp-004-pooled-block-gate.yaml: procedure and decision
rule registered now; units frozen at run time from the post-harvest
memory (units_status pending until then).

Tests (tests/test_learn_rules.py): pooled threshold where no family alone
reaches the bound, no held-out label moves a threshold or the map, a
family with one held-out error cannot block, t_quiet and no blind
silencing, the pooled verdict, the exp-004 manifest.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-10-03 09:40:58 +02:00
Marius CiepluchandClaude Opus 5.5 5b2bd9bb91 merge(learn): negatives harvest -- 98 real fix pairs with surviving functions (79 post-cutoff), paired groups 151 -> 249
Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-10-03 08:29:32 +02:00
Marius CiepluchandClaude Opus 5.5 50c93edfb8 learn: 98 advisory-fix pairs whose function survives the fix (advisory-fixes-2)
Real (vulnerable function, fixed function) pointer pairs for the six compiled
families, mined at zero model cost from reviewed GHSA advisories (pip, npm,
maven, composer), newest first: 79 of 98 published after 2026-06-01
(post_cutoff = true). Each pair: one linked one-parent fix commit, <= 4 source
files / 120 lines, the function holding the changed code lines declared once on
both sides with a changed body; every function diff read and kept only when the
named function holds the fix (145 reviewed, 100 kept); 2 dropped by the
reserved-population test; permissive licences only, no repository named
elsewhere under benchmarks/.

New label source advisory-fixes-2; the advisory-fix tests run over both
batches. Memory 937 -> 1133 static examples (98 paired groups added);
positives-only groups stay 99 (vibe-py/dev-php/v2 data gaps), their share of
positive groups in the six families 0.40 -> 0.29. Embeddings: 7 calls,
$0.0014. No chat-model call. Record:
benchmarks/measurements/2026-10-03-decision-engine-negatives-harvest.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
2026-10-03 08:23:42 +02:00