The loop the maintainer called out: four scale defects in the PHP transfer
replay, found one per two-hour Joern run, all Python bookkeeping between
engine calls. benchmarks/push/python_overhead.py ends that: the real
replay() on the real PMPro pins, with a JoernBackend whose graphs are stubs
and whose queries answer instantly with rows recorded from the real engine.
Engine time is zero, so everything measured is ours, in about a minute,
under the sampling profiler. Its first pass named two more walls:
- Region discovery re-parsed the ruleset for every region: 89,127 TOML
parses, 275 s of a 339 s discovery, twice per push. The fact, obligation
and taxonomy loaders now keep the parsed (immutable) result keyed by each
file's name, size and mtime -- an edit in place or an added file reloads.
Discovery 339 s -> 7 s; output digest identical on PMPro.
- affected_context decoded every span's and every line anchor's path for
every context row -- a changed file has an anchor per unchanged line --
78% of a stubbed push. Decoded once per call, anchors indexed by line and
bisected, original order kept. A randomised control compares it against
the row-by-row matching over 200 contexts (>100 attachments).
Result: the whole stubbed PMPro push, 27,542 answered requests and 2,688
outcomes, runs in 58.5 s of Python. What is left is the engine.
Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01EmM1j46qgKMh3zqD1QMwEo
contributor-scan 2.16, implementing the approved Req 5.6. `c/memory`
scored zero true positives across 89k lines of C and three distinct
classes of false one, for a structural reason: it models string CALLS and
libpng overflows through arithmetic.
The task allowed retiring the family. Kept, scoped and stated instead --
`strcpy` misuse is real in plenty of C and the family earns its place for
that. Retiring it would have removed the disclosure along with the
coverage, leaving a C scan silent for a reason nobody could read.
**Its own description was the quiet-failure risk.** It claimed "bounds,
lifetime, arithmetic", which is exactly what it does not decide. It now
names the APIs it models, and a new `limits` field in families.toml says
what it cannot: an overflow expressed as an index, a pointer offset, or a
memcpy whose size is computed -- which is how most real C overflows are
written, and how every one of libpng's is.
A limit recorded in a fact table nobody reads is no better than silence, so
the report renders it. **What was analysed** lists every family offered to
a region whether or not it found anything, because a family that ran and
reported nothing is the case a reader is most likely to misread, and it
states plainly that silence means no fact table covered the code rather
than that the code is safe.
The counts are derived from the fact tables the arbiter actually used, so
they cannot drift from what the engine looked for; only the limit sentence
is authored, because "cannot decide an overflow expressed as an index" is a
statement about an abstraction and no table can produce it.
A C scan that finds nothing now says:
| c | `memory` | 121 | 9 |
**`memory` (c)** — Models CALLS, not arithmetic...
Gates byte-identical.
Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
99 source modules -> 81. 832 tests -> 646. The whole learning/ package (16
modules, ~4,100 lines) and six semantic/ modules removed, with the three gates
byte-identical to 2026-09-06-gate-baseline.txt at every step.
The sequence is what made it safe: vocabularies ported first (1.1), importers
detached second (1.2-1.3), deletion third (1.4). Every import break during the
deletion was therefore a detachment miss in the importer and was fixed there --
no module was restored to satisfy one. Both misses were the same shape and were
fixed as a class: operations.py and shapes.py each imported trailing_name from
the deleted variants.py, so it moved to semantic/ir.py, its natural home, and
both importers changed in one edit.
Ported before deleting: the closed guard vocabulary (verbatim, nothing else
holds it) into model/specs.py, which derives TaintSpec and DominanceSpec from
the retained ruleset facts rather than copying them. Re-homed: families ->
model/taxonomy, candidates -> model/candidates, endpoint -> model/endpoint,
plus Region, labeled_family and labeled_spans. labeled_family no longer falls
back to the LLM classifier -- an unlabeled pair is honestly unknown.
Four deviations, each recorded in the spec notes with its reason. improve/
evolve.py and validator.py were stripped, not deleted: each mixes the mechanism
lever (gone) with the deterministic rule-status loop `ousast improve` still
runs, which has no LLM in it; a test now asserts the lever's absence by symbol
so it cannot creep back. The learning CLI group became `model candidates`,
because deleting it outright would have orphaned the retained enumerator by
removing its only entry point. thinking moved from [learning] to [models].
A gap named rather than papered over: no retained sink fact routes by CWE to
path, output_encoding, untrusted_destination or prototype -- the same hole the
entailment ceiling diagnosed. The test asserts the seeded set and the gap set
exactly, so task 4.2 must update it when it authors those sinks.
The audit found exactly one genuine orphan: vectorstore.py, a bakeoff harness
with no production caller and no CLI, alive only through its own test. The five
named subsystems each carry an explicit decision. Manifest committed, with a
test asserting the tree still matches it.
Group 2 (the Joern go/no-go) has not started.
Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Claude-Session: https://claude.ai/code/session_01T7XD7x5KonMdmGRkp63EQG
