mirror of
https://github.com/norandom/OpenUltraSAST.git
synced 2026-10-16 19:59:26 +00:00
Marius CiepluchandClaude Opus 4.8
b074cf7f89
A pathologically slow repository (observed: tensorzero, 183s to clone,
then `git blame -C` past the 180s command limit) raised
subprocess.TimeoutExpired, which Git.run mislabeled as a fatal
InstrumentFailure("git_launch_failed") and aborted the whole 300-repo
draft. The same slowness stalled throughput (a 54-minute no-progress
gap).
Give each clone a per-repo wall-clock budget (--extract-deadline,
default 240s, plumbed Clones -> Git, counting the initial clone). A
timeout -- a command exceeding the remaining budget, or the budget
elapsing -- raises ExtractionTimeout(Rejected), which the existing
rejection handler turns into an "extraction_timeout" skip so the draw
moves to the next candidate. Genuine launch failures and non-zero git
exits stay fatal; timeouts and launch failures are now distinct. The
deadline is recorded on the report only, not the journal inputs, so
changing it does not refuse resume.
181 unseen tests pass, ruff clean.
Co-Authored-By: Claude Opus 4.8 <[email protected]>
503 lines
21 KiB
Python
503 lines
21 KiB
Python
"""Git-only change extraction; clients and subprocess execution are injectable.
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No scanner, engine or model runs here. Function boundaries are syntax, not a security
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judgement: the first removed code line of a fix is the SZZ sink proxy. Ambiguous sites
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are dropped, and the recorded SZZ bias remains subject to task 2.6's label check.
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"""
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from __future__ import annotations
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import ast
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import json
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import re
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import subprocess
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import time
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from pathlib import Path
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from .source import Candidate, Rejected
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LANGUAGES = {".py", ".js", ".jsx", ".mjs", ".cjs", ".ts", ".tsx", ".php", ".java"}
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HUNK = re.compile(r"^@@ -(\d+)(?:,(\d+))? \+(\d+)(?:,(\d+))? @@", re.M)
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SHA = re.compile(r"[a-f0-9]{40}")
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BIAS = {
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"introducing": "SZZ last-writer proxy: refactors, moves and reformats can misidentify the introduction in either direction.",
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"last_touch": "Pessimistic lower bound: the flaw may already exist in base, so a delta hook can correctly stay quiet.",
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}
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class InstrumentFailure(ValueError):
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"""A failed read or command must never masquerade as an empty history."""
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class ExtractionTimeout(Rejected):
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"""A slow repository is skipped without aborting the draft."""
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class Git:
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def __init__(self, path: Path, *, runner=None, limit_bytes: int | None = None, deadline_seconds: float | None = None, _now=None):
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self._now = _now or time.monotonic
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self.started = self._now()
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self.deadline_seconds = deadline_seconds
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self.path = path
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self.runner = runner or subprocess.run
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self.bytes_read = 0
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self.files_read = 0
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self.last_blob_bytes = 0
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self.limit_bytes = limit_bytes
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def command_timeout(self) -> float:
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if self.deadline_seconds is None:
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return 180
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remaining = self.deadline_seconds - (self._now() - self.started)
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if remaining <= 0:
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raise ExtractionTimeout("extraction_timeout")
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return min(180, remaining)
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def run(self, *args: str, allowed=(0,)) -> str:
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timeout = self.command_timeout()
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try:
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done = self.runner(
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["git", "-c", "core.quotePath=false", "-C", str(self.path), *args],
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stdin=subprocess.DEVNULL,
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stdout=subprocess.PIPE,
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stderr=subprocess.PIPE,
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timeout=timeout,
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check=False,
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)
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except subprocess.TimeoutExpired:
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raise ExtractionTimeout("extraction_timeout") from None
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except Exception:
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raise InstrumentFailure("git_launch_failed") from None
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if done.returncode not in allowed:
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raise InstrumentFailure("git_exit_" + str(done.returncode))
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if self.limit_bytes is not None and self.disk_bytes() > self.limit_bytes:
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raise InstrumentFailure("clone_size_cap")
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self.last_blob_bytes = len(done.stdout)
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return done.stdout.decode("utf-8", errors="replace")
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def disk_bytes(self) -> int:
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# git churns .git/objects/pack (incl. transient *.rev) during on-demand blob
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# fetches, so a path rglob just listed can vanish before stat(): skip it.
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total = 0
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for p in self.path.rglob("*"):
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try:
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if p.is_file() and not p.is_symlink():
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total += p.stat().st_size
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except OSError:
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continue
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return total
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def parents(self, sha: str) -> list[str]:
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return self.run("rev-list", "--parents", "-n", "1", sha).split()[1:]
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def blob(self, sha: str, path: str) -> str | None:
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# Missing is established by a successful tree read, never by swallowing a show error.
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if not self.run("ls-tree", sha, "--", path).strip():
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return None
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text = self.run("show", f"{sha}:{path}")
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if Path(path).suffix in LANGUAGES:
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self.files_read += 1
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self.bytes_read += self.last_blob_bytes
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return text
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def stats(self, base: str, head: str) -> list[tuple[str, int, int]]:
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rows = []
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for line in self.run("diff", "--no-renames", "--numstat", base, head, "--").splitlines():
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added, removed, path = line.split("\t", 2)
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rows.append((path, int(added) if added.isdigit() else 0, int(removed) if removed.isdigit() else 0))
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return rows
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def hunks(self, base: str, head: str, path: str) -> list[tuple[int, int, int, int]]:
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diff = self.run("diff", "--no-ext-diff", "--no-renames", "-U0", base, head, "--", path)
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return [(int(m[1]), int(m[2] or 1), int(m[3]), int(m[4] or 1)) for m in HUNK.finditer(diff)]
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def ancestor(self, older: str, newer: str) -> bool:
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# rev-list avoids interpreting a command failure as a negative ancestry result.
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return not self.run("rev-list", "--max-count=1", older, "--not", newer).strip()
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def blame(self, revision: str, path: str, line: int) -> tuple[str, str, int]:
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text = self.run("blame", "-w", "-M", "-C", "--porcelain", f"-L{line},{line}", revision, "--", path)
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header = text.splitlines()[0].split()
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if len(header) < 3 or not SHA.fullmatch(header[0]):
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raise InstrumentFailure("invalid_blame")
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filename = next((row[9:] for row in text.splitlines() if row.startswith("filename ")), path)
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if filename.startswith('"'):
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filename = json.loads(filename)
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return header[0], filename, int(header[1])
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def functions(path: str, text: str) -> list[tuple[str, int, int]]:
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"""Conservative syntax boundaries. No scanner import; unresolved sites are rejected."""
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if Path(path).suffix == ".py":
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try:
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tree = ast.parse(text)
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except SyntaxError:
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raise Rejected("function_parse") from None
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return [
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(n.name, n.lineno, n.end_lineno or n.lineno) for n in ast.walk(tree) if isinstance(n, ast.FunctionDef | ast.AsyncFunctionDef)
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]
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# Blank comments and quoted strings before brace matching. Keep newlines/offsets.
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masked = re.sub(
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r'/\*.*?\*/|//[^\n]*|\#[^\n]*|"(?:\\.|[^"\\])*"|\'(?:\\.|[^\'\\])*\'|`(?:\\.|[^`\\])*`',
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lambda m: "".join("\n" if c == "\n" else " " for c in m[0]),
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text,
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flags=re.S,
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)
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declaration = re.compile(
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r"\bfunction\s*&?\s*(\w+)\s*\([^)]*\)\s*(?::[^\n{]+)?\s*\{|"
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r"\b(?:const|let|var)\s+(\w+)\s*=\s*(?:async\s*)?(?:\([^)]*\)|\w+)\s*=>\s*\{|"
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r"\b([\w$]+)\s*\([^;{}]*\)\s*(?:throws\s+[\w., ]+)?\s*\{"
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)
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found = []
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for match in declaration.finditer(masked):
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name = next(g for g in match.groups() if g)
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if name in {"if", "while", "for", "switch", "catch", "with", "synchronized"}:
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continue
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depth = 1
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end = match.end()
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while end < len(masked) and depth:
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depth += (masked[end] == "{") - (masked[end] == "}")
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end += 1
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if depth == 0:
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found.append((name, masked.count("\n", 0, match.start()) + 1, masked.count("\n", 0, end) + 1))
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return found
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def enclosing(path: str, text: str, line: int, *, global_ok=False) -> tuple[str, int, int] | None:
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spans = [s for s in functions(path, text) if s[1] <= line <= s[2]]
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if spans:
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return min(spans, key=lambda s: s[2] - s[1])
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return ("<global>", 1, max(1, len(text.splitlines()))) if global_ok else None
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def normalized(text: str) -> str:
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return re.sub(r"\s+", "", text)
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def site_at(git, revision: str, path: str, name: str):
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text = git.blob(revision, path)
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if text is None:
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return None
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spans = [("<global>", 1, max(1, len(text.splitlines())))] if name == "<global>" else [s for s in functions(path, text) if s[0] == name]
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if len(spans) != 1:
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return None
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return text, spans[0]
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def fix_sites(git, fix: str, parent: str, *, global_ok=False) -> list[dict]:
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sites = []
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for path, _, _ in git.stats(parent, fix):
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if Path(path).suffix not in LANGUAGES:
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continue
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text = git.blob(parent, path)
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if text is None:
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continue
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lines = text.splitlines()
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for start, count, _, _ in git.hunks(parent, fix, path):
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for line in range(max(1, start), max(1, start) + max(1, count)):
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if line > len(lines):
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continue
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span = enclosing(path, text, line, global_ok=global_ok)
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if span is None:
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continue
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sink_line = line if count else span[1]
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sink = lines[sink_line - 1]
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if not sink.strip() or sink.lstrip().startswith(("#", "//", "/*", "*")):
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continue
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key = (path, span[0])
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if any((s["path"], s["function"]) == key for s in sites):
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continue
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sites.append({"path": path, "function": span[0], "line": sink_line, "text": sink, "absence": count == 0, "span": span})
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return sites
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def version_bracket(git, candidate: Candidate, revision: str) -> bool:
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if not candidate.first_affected:
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return True
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tags = git.run("tag", "--sort=version:refname").splitlines()
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matching = [t for t in tags if t.removeprefix("v") == candidate.first_affected]
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if len(matching) != 1:
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return False
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affected = matching[0]
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earlier = [t for t in tags[: tags.index(affected)] if git.ancestor(t, affected)]
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return bool(earlier) and git.ancestor(revision, affected) and not git.ancestor(revision, earlier[-1])
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def change_files(git, base: str, head: str) -> list[dict]:
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return [
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{"path": path, "head_lines": [[max(1, new), max(1, new + max(count, 1) - 1)] for _, _, new, count in git.hunks(base, head, path)]}
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for path, _, _ in git.stats(base, head)
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]
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def introducing(git, candidate: Candidate) -> dict:
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from collections import Counter
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if git.parents(candidate.fix) != [candidate.parent]:
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raise Rejected("fix_parents")
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sites = fix_sites(git, candidate.fix, candidate.parent, global_ok=candidate.family == "config_secrets")
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reasons = Counter()
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def record(method, base, head, path, name):
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resolved = site_at(git, head, path, name)
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if resolved is None:
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return None
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return {
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"kind": "vulnerability",
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"base": base,
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"head": head,
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"method": method,
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"family": candidate.family,
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"function": name,
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"path": path,
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"function_lines": list(resolved[1][1:]),
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"files": change_files(git, base, head),
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"post_cutoff": candidate.post_cutoff,
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"advisory": candidate.advisory,
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"bias": BIAS[method],
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"fallback_reasons": dict(reasons),
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}
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for site in sites:
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revision, path, line = candidate.parent, site["path"], site["line"]
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for _ in range(6): # initial blame plus at most five walk-back steps
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blamed, blamed_path, blamed_line = git.blame(revision, path, line)
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parents = git.parents(blamed)
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if len(parents) != 1:
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reasons["merge_or_root"] += 1
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break
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base = parents[0]
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head_site = site_at(git, blamed, blamed_path, site["function"])
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if head_site is None:
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reasons["unresolved_function"] += 1
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break
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parent_text = git.blob(base, blamed_path)
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if parent_text is not None and site["function"] != "<global>":
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matching = [span for span in functions(blamed_path, parent_text) if span[0] == site["function"]]
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if len(matching) > 1:
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reasons["ambiguous_parent"] += 1
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break
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old_site = site_at(git, base, blamed_path, site["function"])
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occurrences = []
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if old_site:
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text, (_, start, end) = old_site
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occurrences = [
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i for i, value in enumerate(text.splitlines(), 1) if start <= i <= end and normalized(value) == normalized(site["text"])
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]
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if occurrences:
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reasons["text_present"] += 1
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revision, path, line = base, blamed_path, occurrences[0]
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continue
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stats = git.stats(base, blamed)
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if len(stats) > 50 or sum(a + d for _, a, d in stats) > 2000:
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reasons["size_cap"] += 1
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break
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if not version_bracket(git, candidate, blamed):
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reasons["version_bracket"] += 1
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break
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result = record("introducing", base, blamed, blamed_path, site["function"])
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if result:
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return result
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else:
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reasons["walkback_limit"] += 1
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for site in sites:
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# Numeric function extent implements log -L for all five languages, including
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# languages for which Git has no built-in :function: driver.
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_, start, end = site["span"]
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history = git.run("log", "--format=%H", "--no-patch", f"-L{start},{end}:{site['path']}", candidate.parent).splitlines()
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if not history:
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continue
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latest = history[0]
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parents = git.parents(latest)
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if len(parents) != 1:
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continue
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result = record("last_touch", parents[0], candidate.parent, site["path"], site["function"])
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if result:
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return result
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raise Rejected("no_range")
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SECURITY = re.compile(r"secur|cve|ghsa|vuln|inject|xss|csrf|ssrf|exploit|sanitiz|escap", re.I)
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DEPENDENCY = re.compile(r"\bbump\b|\bupgrade .* from\b", re.I)
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MANIFESTS = {
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"package.json",
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"package-lock.json",
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"yarn.lock",
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"pnpm-lock.yaml",
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"composer.json",
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"composer.lock",
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"pom.xml",
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"build.gradle",
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"build.gradle.kts",
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"gradle.lockfile",
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"pyproject.toml",
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"setup.py",
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"setup.cfg",
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"Pipfile",
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"Pipfile.lock",
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"poetry.lock",
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"uv.lock",
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}
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def generated_path(path: str) -> bool:
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return bool({"vendor", "node_modules", "dist"} & set(Path(path).parts)) or path.endswith(".min.js")
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def manifest(path: str) -> bool:
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name = Path(path).name
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return name in MANIFESTS or name.endswith(".lock") or bool(re.fullmatch(r"requirements[^/]*\.txt", name))
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def ordinary_rejection(row: dict, fixes: set[str], known_functions: set[tuple[str, str]]) -> str | None:
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if len(row["parents"]) != 1:
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return "merge_or_root"
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if row["head"] in fixes:
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return "advisory_fix"
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if SECURITY.search(row["message"]):
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return "security"
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if re.search(r"^Revert|This reverts commit", row["message"], re.I | re.M):
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return "revert"
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if re.search(r"dependabot|renovate|\[bot\]", row["author"], re.I) or DEPENDENCY.search(row["message"]):
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return "dependency"
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files = row["files"]
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if files and all(manifest(f["path"]) for f in files):
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return "manifest_only"
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source = [f for f in files if Path(f["path"]).suffix in LANGUAGES and not manifest(f["path"])]
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if not source:
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return "no_source"
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if all(f["generated"] or generated_path(f["path"]) for f in source):
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return "generated"
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if any((f["path"], name) in known_functions for f in files for name in f["functions"]):
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return "vulnerable_function"
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if any((f["path"], "<global>") in known_functions for f in files):
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return "vulnerable_function"
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if sum(f["added"] + f["removed"] for f in source) > 1000:
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return "size_cap"
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return None
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def generated(git, revision: str, path: str, text: str) -> bool:
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import fnmatch
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if generated_path(path):
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return True
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header = "\n".join(text.splitlines()[:20])
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if re.search(r"(?im)^\s*(?:#|//|/\*|\*|<!--).*?(?:@generated|auto.?generated|generated\s+(?:by|file|code)|do not edit)", header):
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return True
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result = False
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parts = Path(path).parts
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for index in range(len(parts)):
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directory = "/".join(parts[:index])
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attributes = git.blob(revision, (directory + "/" if directory else "") + ".gitattributes") or ""
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relative = "/".join(parts[index:])
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for line in attributes.splitlines():
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tokens = line.split()
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if not tokens or tokens[0].startswith("#"):
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continue
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pattern = tokens[0].lstrip("/")
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target = relative if "/" in pattern else Path(relative).name
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if fnmatch.fnmatchcase(target, pattern):
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for token in tokens[1:]:
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if token in {"linguist-generated", "linguist-generated=true"}:
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result = True
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elif token in {"-linguist-generated", "!linguist-generated", "linguist-generated=false"}:
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result = False
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return result
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def ordinary_history(git, head: str) -> list[dict]:
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raw = git.run("log", "--first-parent", "--format=%H%x00%P%x00%ct%x00%an%x00%B%x1e", head)
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rows = []
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for entry in raw.split("\x1e"):
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if not entry.strip():
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continue
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fields = entry.strip().split("\x00")
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if len(fields) != 5 or not SHA.fullmatch(fields[0]):
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raise InstrumentFailure("invalid_history")
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sha, parents, timestamp, author, message = fields
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row = {"head": sha, "parents": parents.split(), "timestamp": int(timestamp), "author": author, "message": message, "files": []}
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rows.append(row)
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if len(row["parents"]) != 1:
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continue
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base = row["parents"][0]
|
|
for path, added, removed in git.stats(base, sha):
|
|
hunks = git.hunks(base, sha, path)
|
|
info = {
|
|
"path": path,
|
|
"added": added,
|
|
"removed": removed,
|
|
"head_lines": [[max(1, n), max(1, n + max(c, 1) - 1)] for _, _, n, c in hunks],
|
|
"functions": [],
|
|
"generated": False,
|
|
}
|
|
if Path(path).suffix in LANGUAGES:
|
|
# Inspect both sides: deleting a vulnerable function is still touching it.
|
|
for revision, side in ((base, 0), (sha, 2)):
|
|
text = git.blob(revision, path)
|
|
if text is None:
|
|
continue
|
|
spans = functions(path, text)
|
|
for hunk in hunks:
|
|
start, count = hunk[side : side + 2]
|
|
for name, lo, hi in spans:
|
|
if max(1, start) <= hi and start + max(count, 1) - 1 >= lo:
|
|
info["functions"].append(name)
|
|
info["generated"] |= generated(git, revision, path, text)
|
|
row["files"].append(info)
|
|
return rows
|
|
|
|
|
|
def draw_ordinary(rows: list[dict], fixes: set[str], known_functions: set[tuple[str, str]], *, seed: int) -> tuple[list[dict], dict]:
|
|
import random
|
|
from collections import Counter, defaultdict
|
|
|
|
counts = Counter()
|
|
eligible = []
|
|
for row in rows:
|
|
reason = ordinary_rejection(row, fixes, known_functions)
|
|
counts[reason or "eligible"] += 1
|
|
if reason is None:
|
|
eligible.append(row)
|
|
if len(eligible) < 40:
|
|
failure = Rejected("ordinary_floor")
|
|
failure.counts = dict(counts)
|
|
raise failure
|
|
earliest, latest = min(r["timestamp"] for r in rows), max(r["timestamp"] for r in rows)
|
|
cells = defaultdict(list)
|
|
for row in eligible:
|
|
third = min(2, 3 * (row["timestamp"] - earliest) // max(1, latest - earliest + 1))
|
|
size = sum(f["added"] + f["removed"] for f in row["files"] if Path(f["path"]).suffix in LANGUAGES and not manifest(f["path"]))
|
|
bucket = 0 if size <= 10 else 1 if size <= 50 else 2 if size <= 200 else 3
|
|
cells[third, bucket].append(row)
|
|
if {t for t, _ in cells} != {0, 1, 2}:
|
|
failure = Rejected("time_thirds")
|
|
failure.counts = dict(counts)
|
|
raise failure
|
|
# Largest-deficit rounding with the mandatory minimum of one per time third.
|
|
# No cell can receive more draws than it has eligible commits.
|
|
allocation = Counter()
|
|
targets = {cell: 12 * len(items) / len(eligible) for cell, items in cells.items()}
|
|
for third in range(3):
|
|
cell = max(sorted(c for c in cells if c[0] == third), key=lambda c: targets[c])
|
|
allocation[cell] = 1
|
|
while sum(allocation.values()) < 12:
|
|
cell = max(sorted(c for c in cells if allocation[c] < len(cells[c])), key=lambda c: targets[c] - allocation[c])
|
|
allocation[cell] += 1
|
|
rng = random.Random(seed)
|
|
drawn = []
|
|
for cell in sorted(cells):
|
|
for row in rng.sample(sorted(cells[cell], key=lambda r: r["head"]), allocation[cell]):
|
|
drawn.append(
|
|
{
|
|
"kind": "ordinary",
|
|
"base": row["parents"][0],
|
|
"head": row["head"],
|
|
"method": "first_parent",
|
|
"time_third": cell[0],
|
|
"size_bucket": cell[1],
|
|
"files": [{"path": f["path"], "head_lines": f["head_lines"]} for f in row["files"]],
|
|
}
|
|
)
|
|
return drawn, dict(counts)
|